RNA id: TCONS_00058808


Basic Information

Item Value
RNA id TCONS_00058808
length 2282
RNA type processed_transcript
GC content 0.40
exon number 7
gene id XLOC_030066
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24128908 ~ 24135569 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCTCACTGCAGTAACGCAAGCACAAATCAATCTCACAAGTGTGGGGCATGGACAGTGCATAGGAATTTCTTGGAAAATGGAAATATTTCAATGGACTTAAATGGAGAAGAATTTTACACAGCAGAGCATTTTCAACATTGAAATACTGCTGATGTGTCTTATCAAGTTGTACCCTCTGAAGAATTGACATGATTGGCTGGATGAAGGAAACAGATTGACTCTGTGGCTGGAAATCAGATTAAGAACAAAAATAACTCCTTTTATAAAGGCATGTACATTTACCTAATAGATGTTGAAAGATTTTGTCAGCATCTAATAAGATGACCATTTTCCAAAAATGAATACCCAATAATCATAGTAACTTTTTGTAACAAGAGACCTCTTCAAGTAAGAACCACGATGAGAAAGAAGACTTGCATTCATGACAGATCAACAAAGATGGGAACACACTGAACCAGTCATCACATGGGTGGTTTTTATGAAATCTTTAAACTTTCACAAAATATGCTCTGAATTGCCATGTTGATGACTTGCAGAGACCCCTTGTACCTCTACAACTCTCTTCACTGAAATGGAGGTTGTGCTGAAGACACAATACAGATTTGTCTAGTGAAATATGGTTACCAGATACCAACCATTCATTTGTAGTCCCCTCAATAGATGTTTTGGAACAGAAGATCTGCTTAAGGATTTATATGAAGATTCATGAAGATGCATATACAGAGAAGATAATTGAAACACCAGCAATGCACAAGCAGTGTGAAGTTTCATCAAGGAGAACTGGCCAAAAATGGTACAAATCAACAACGTTCAGAAGATTCTCTCAACGCCGAATACAGAACTGCAAACCTCCATTTAAGTCAAGAAATGAGTGTTCCAGcaggaaaaaatattttcagtctTCAATATGAGAGGATAGGTCAAGAGGAACGCATCTGGCTTGTCAACTCTGGAGAAAAAGGAAGCGCTCACCTGCTAATTGATTCACTTTTTGGAACGTAAAACCTGCATGGCGTCCTTCAGTCCACTCATTGAGTCTGCCAAGGTCTGTTATTCACATTAGCAAAAGGATGGCTGCTAAAGGCCAAGTTGAATCAGGGAAAATTATTCTACCAATTCAAACTGAACCATGGAGATGTTGGGCTTGCTTTGCTCTCCTCACCGATAGACAGGCGACTTTCACGTGACCTTGTTGTGGTTTCCCATTGGGAGGCAGGCCACAAGCCCAGTACTAGTCCCAGGAACAGTGCACCTTGGAGGAATAAGGCATCCAGGAGCAAGTCTGAGGAATCAGAATCTCGTGGAAATTTGACGTTGAATGAACGTTTCACCAAGCTGCAAAGTCCTCCTAGCTCCTCACaggaacagaaagaaagaaggtCTTCTGGAAGTCCACCAAAAACCCGGAAGCCGGTTGCATTTCAGAGGCCTGGTTTCCGCCCAGCTGTTGGAGTGAAGAGGCCGTCGGCACCTGATGGAGTTATCAGGAAACCTTTGATGagTACTTTGATTCCAAGACCAACCTTCAACCAGAAGTCCGTCTTCAAAAAGAGTCAGAGTATCATGTCAAAATACAAGAACTTGCAGACACTGCGGCATAAAGTGCCCCATCAGCGTCAAGCCACTAGCTATCGCCGGTGGTGATCCAGAACGatttcatTAGGTGAGGCGAGTGTCCAGAGTTGAGCGTCTCTCCAGAGCTGCCCATCTTCCTCACCTGACATTTTTGCTGTATGATAGTTTGAGCTAATCTCTGTAAAAACCACAAAGATCACCAAAGTATTTTCGTTTCTTCTGTagcaatgttttttgttttgttggcgTGCTATAGAGGTCAATTGAATCGTCTCGACTTGTGCATTAGTCTTATCAGAGTTTGGAAAAACAGAGACTAGTtgctttttcttttgtaatttaaatttaacctGTACAAATATATGTACTTTTTGCCATAATTTtgtgaaaatattattttttagctttggttAGAATAGTGTTTTTTTCACATGTAGTCGTAGCTCAAACATCAGTGTCTAAATAGCTGCTTTTTGAAAGTGACTGTTAAAAGACGCGTATCATGCGACCTGATCCCTGCTGAATGATGTACAAAGACTAGCTTTCATTTGATGAAGAGTTTTGAGAGTTTTTGTTGAGCTCCATGTGCTGATAAATGACGTCCCTGAAGAGTTTTGTTTGTGCAGCTCATAAAACACCTGTACATTCTTTGTAATCAGATACTTTGAATAAAACTGGAGTTGTCAGATACCTTCAAAtcaaaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8522 No description available

Ensembl:

ensembl_id ENSDART00000142517

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058802 lncRNA upstream 40954 24086516 ~ 24091347 (+) False XLOC_030065
TCONS_00061692 lncRNA upstream 48072 24077355 ~ 24084229 (+) True XLOC_030057
TCONS_00061690 lncRNA upstream 52540 23901787 ~ 24079761 (+) False XLOC_030057
TCONS_00058795 lncRNA upstream 71052 24059769 ~ 24061249 (+) True XLOC_030063
TCONS_00061691 lncRNA upstream 121402 24008862 ~ 24010899 (+) True XLOC_030061
TCONS_00061693 lncRNA downstream 65096 24200665 ~ 24203402 (+) False XLOC_030069
TCONS_00058812 lncRNA downstream 67054 24202623 ~ 24222523 (+) False XLOC_030069
TCONS_00058813 lncRNA downstream 84032 24219601 ~ 24228356 (+) True XLOC_030069
TCONS_00061694 lncRNA downstream 125981 24261550 ~ 24278326 (+) True XLOC_030071
TCONS_00061695 lncRNA downstream 205108 24340677 ~ 24439386 (+) False XLOC_030074
TCONS_00058801 mRNA upstream 34496 24086227 ~ 24097805 (+) False XLOC_030065
TCONS_00058800 mRNA upstream 34504 24086227 ~ 24097797 (+) False XLOC_030065
TCONS_00058799 mRNA upstream 34504 24086227 ~ 24097797 (+) False XLOC_030065
TCONS_00058806 mRNA upstream 34504 24089334 ~ 24097797 (+) True XLOC_030065
TCONS_00058804 mRNA upstream 35419 24087035 ~ 24096882 (+) False XLOC_030065
TCONS_00058810 mRNA downstream 20601 24156170 ~ 24163572 (+) True XLOC_030067
TCONS_00058811 mRNA downstream 43738 24179307 ~ 24185865 (+) True XLOC_030068
TCONS_00058814 mRNA downstream 110113 24245682 ~ 24259992 (+) True XLOC_030070
TCONS_00058815 mRNA downstream 147001 24282570 ~ 24294064 (+) False XLOC_030072
TCONS_00058816 mRNA downstream 152358 24287927 ~ 24294160 (+) True XLOC_030072
TCONS_00058805 other upstream 38434 24089324 ~ 24093867 (+) False XLOC_030065
TCONS_00058803 other upstream 40954 24086598 ~ 24091347 (+) False XLOC_030065
TCONS_00058790 other upstream 221852 23910333 ~ 23910449 (+) True XLOC_030058
TCONS_00058788 other upstream 458926 23673259 ~ 23673375 (+) True XLOC_030053
TCONS_00058777 other upstream 563839 23568347 ~ 23568462 (+) True XLOC_030049
TCONS_00058819 other downstream 386113 24521682 ~ 24521750 (+) True XLOC_030076
TCONS_00058834 other downstream 1545273 25680842 ~ 25682105 (+) False XLOC_030089
TCONS_00058845 other downstream 1676304 25811873 ~ 25812239 (+) True XLOC_030092
TCONS_00058848 other downstream 1836499 25972068 ~ 25972160 (+) True XLOC_030094
TCONS_00058859 other downstream 2077063 26212632 ~ 26220157 (+) False XLOC_030103

Expression Profile

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