RNA id: TCONS_00061693


Basic Information

Item Value
RNA id TCONS_00061693
length 865
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_030069
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24200665 ~ 24228356 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGTGACCCCAGCCGTAGCTGTCCATCCTCGGGCTTCCACCTGACCCCTGAGCCGCGGCAGCCGCCACTATCTTCCCTGATGCGGCTGAACTTCCCTGACGCTGTGTCTTCCAGCCCAGTGAGTCGTCTTCTCTAATGACCGCAGGTGTGAGTAGTTACTCCTTATCACCCAACCATCCATACACATTAGTTTCTATAGGCATCACTTCACACTTCTATTGTGAGCCCTGCATCCCCAAACACAGCCACTACGACTGACCATCAGTAAGAAGTGTGACAATGAACTCCCCCCCTCTGAGTTTAGCTTGTACTAACACATCATCTGAATGTTCCTATAAGACCTCCAAAAAAGCTGTTATAAAAATGACTTTATTAGGCTTCCTTTAACAACTTATGAAAAGTTACTGTTCAATAGACGGCATTACTTTTTAAACCAGCGAACAAATGCATCCTAAACTGGATGGGGAGTTTCTGTAGCCCTTTCCCTTCTCTTTTGTTCTGGTTTCTCCCGTTTAATCATTGATGACACCTATAATCCAGACTGAGGGTCATTTTGCTAATAGAGTTGGAGcatatttctaatttatttaggCTTGTTCTGTTTGTATCAGCTACCAATGTAGTAACAGATTTGAGGATGCTTAAAGAATGTAGAGGTGCAGAGCTCATTTGTTATGCTTACATTATTGGAACATAACTCAACGAcacaataaaacttttattttgaggtttgctttaaattaaattgaGTGAATTTTCATCTATAAAACAGTAATGCAAGCATCTACTAACCTAGTTTTGAATAACTTTTTGGGAAAATAAAATGAAGGTtcgaaatgagcatttttctcaggatGCCTAAAG

Function

GO:

id name namespace
GO:0046040 IMP metabolic process biological_process
GO:0006188 IMP biosynthetic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058809 lncRNA upstream 65894 24133480 ~ 24134771 (+) True XLOC_030066
TCONS_00058802 lncRNA upstream 109318 24086516 ~ 24091347 (+) False XLOC_030065
TCONS_00061692 lncRNA upstream 116436 24077355 ~ 24084229 (+) True XLOC_030057
TCONS_00061690 lncRNA upstream 120904 23901787 ~ 24079761 (+) False XLOC_030057
TCONS_00058813 lncRNA downstream 16199 24219601 ~ 24228356 (+) True XLOC_030069
TCONS_00061694 lncRNA downstream 58148 24261550 ~ 24278326 (+) True XLOC_030071
TCONS_00061695 lncRNA downstream 137275 24340677 ~ 24439386 (+) False XLOC_030074
TCONS_00061696 lncRNA downstream 189977 24393379 ~ 24444287 (+) False XLOC_030074
TCONS_00061697 lncRNA downstream 220994 24424396 ~ 24439386 (+) False XLOC_030074
TCONS_00058811 mRNA upstream 14800 24179307 ~ 24185865 (+) True XLOC_030068
TCONS_00058810 mRNA upstream 37093 24156170 ~ 24163572 (+) True XLOC_030067
TCONS_00058807 mRNA upstream 65096 24128908 ~ 24135569 (+) False XLOC_030066
TCONS_00058801 mRNA upstream 102860 24086227 ~ 24097805 (+) False XLOC_030065
TCONS_00058800 mRNA upstream 102868 24086227 ~ 24097797 (+) False XLOC_030065
TCONS_00058814 mRNA downstream 42280 24245682 ~ 24259992 (+) True XLOC_030070
TCONS_00058815 mRNA downstream 79168 24282570 ~ 24294064 (+) False XLOC_030072
TCONS_00058816 mRNA downstream 84525 24287927 ~ 24294160 (+) True XLOC_030072
TCONS_00058817 mRNA downstream 102475 24305877 ~ 24309667 (+) True XLOC_030073
TCONS_00058818 mRNA downstream 317035 24520437 ~ 24532386 (+) False XLOC_030076
TCONS_00058808 other upstream 65096 24132301 ~ 24135569 (+) False XLOC_030066
TCONS_00058805 other upstream 106798 24089324 ~ 24093867 (+) False XLOC_030065
TCONS_00058803 other upstream 109318 24086598 ~ 24091347 (+) False XLOC_030065
TCONS_00058790 other upstream 290216 23910333 ~ 23910449 (+) True XLOC_030058
TCONS_00058788 other upstream 527290 23673259 ~ 23673375 (+) True XLOC_030053
TCONS_00058819 other downstream 318280 24521682 ~ 24521750 (+) True XLOC_030076
TCONS_00058834 other downstream 1477440 25680842 ~ 25682105 (+) False XLOC_030089
TCONS_00058845 other downstream 1608471 25811873 ~ 25812239 (+) True XLOC_030092
TCONS_00058848 other downstream 1768666 25972068 ~ 25972160 (+) True XLOC_030094
TCONS_00058859 other downstream 2009230 26212632 ~ 26220157 (+) False XLOC_030103

Expression Profile

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