RNA id: TCONS_00058822


Basic Information

Item Value
RNA id TCONS_00058822
length 517
lncRNA type retained_intron
GC content 0.51
exon number 3
gene id XLOC_030077
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24543862 ~ 24567869 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGACAGCTCCCAGCATCCTCATCCACTTTATCAACATGTTCCTGATGATGGGCGACTCTGGCCGACCACTCTATCCAGGACAGGCTGGATTTCAAGTGTTCTTGGTGATCGTTGCTGTGTTTTCTGTGCCTGTGTTATTATTTGGTAAACCCCTCTACATCTACTGGCAACACAAGGGCAGAGACCGCCTGAGCATGTACAGGGGTTACCAGCGTGTGCGCAGGAGCAGTGAGGAGGAGCTTTCTCTCTTGCACACTCATGACTTGGAGGAGGGCAGCAGTCTGGACAGCCACTCTTCCAGctctgacagccaatcagaagaggTCAGACACTCTCAGCCAGCTGTTAATAAACTGCATTCTCTATGAGCCTAACAAAGTTTCCTCTTCTCCTGCAGCCTGATTTTCCGGATCTGTTTCTTAATCAGTCCATTCACACGATTGAGTATTGCCTTGGCTGCATCTCTAATACTGCGTCTTACCTCCGCCtgtgggctctcagcctggcacATGCCC

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0007035 vacuolar acidification biological_process
GO:0006811 ion transport biological_process
GO:0016471 vacuolar proton-transporting V-type ATPase complex cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0005886 plasma membrane cellular_component
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0051117 ATPase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-4 Predicted to enable ATPase binding activity. Predicted to be involved in vacuolar acidification. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IIA and wrinkly skin syndrome. Orthologous to human ATP6V0A2 (ATPase H+ transporting V0 subunit a2).

Ensembl:

ensembl_id ENSDART00000143961

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058821 lncRNA upstream 305 24552423 ~ 24556825 (+) False XLOC_030077
TCONS_00061433 lncRNA upstream 85054 24469471 ~ 24472076 (+) True XLOC_030075
TCONS_00061698 lncRNA upstream 106610 24443055 ~ 24450520 (+) True XLOC_030074
TCONS_00061696 lncRNA upstream 112843 24393379 ~ 24444287 (+) False XLOC_030074
TCONS_00061695 lncRNA upstream 117744 24340677 ~ 24439386 (+) False XLOC_030074
TCONS_00061699 lncRNA downstream 255150 24816325 ~ 24835317 (+) True XLOC_030078
TCONS_00061700 lncRNA downstream 312630 24873805 ~ 24879565 (+) True XLOC_030079
TCONS_00061434 lncRNA downstream 687023 25248198 ~ 25249676 (+) True XLOC_030083
TCONS_00061701 lncRNA downstream 750088 25311263 ~ 25314751 (+) False XLOC_030085
TCONS_00061702 lncRNA downstream 1139850 25701025 ~ 25710432 (+) True XLOC_030090
TCONS_00058818 mRNA upstream 24744 24520437 ~ 24532386 (+) False XLOC_030076
TCONS_00058817 mRNA upstream 247463 24305877 ~ 24309667 (+) True XLOC_030073
TCONS_00058816 mRNA upstream 262970 24287927 ~ 24294160 (+) True XLOC_030072
TCONS_00058815 mRNA upstream 263066 24282570 ~ 24294064 (+) False XLOC_030072
TCONS_00058814 mRNA upstream 297138 24245682 ~ 24259992 (+) True XLOC_030070
TCONS_00058823 mRNA downstream 321458 24882633 ~ 24886597 (+) True XLOC_030080
TCONS_00058824 mRNA downstream 511719 25072894 ~ 25075179 (+) False XLOC_030081
TCONS_00058825 mRNA downstream 513473 25074648 ~ 25075057 (+) True XLOC_030081
TCONS_00058826 mRNA downstream 523210 25084385 ~ 25087292 (+) False XLOC_030082
TCONS_00058827 mRNA downstream 523235 25084410 ~ 25087189 (+) True XLOC_030082
TCONS_00058819 other upstream 35380 24521682 ~ 24521750 (+) True XLOC_030076
TCONS_00058808 other upstream 421561 24132301 ~ 24135569 (+) False XLOC_030066
TCONS_00058805 other upstream 463263 24089324 ~ 24093867 (+) False XLOC_030065
TCONS_00058803 other upstream 465783 24086598 ~ 24091347 (+) False XLOC_030065
TCONS_00058790 other upstream 646681 23910333 ~ 23910449 (+) True XLOC_030058
TCONS_00058834 other downstream 1119667 25680842 ~ 25682105 (+) False XLOC_030089
TCONS_00058845 other downstream 1250698 25811873 ~ 25812239 (+) True XLOC_030092
TCONS_00058848 other downstream 1410893 25972068 ~ 25972160 (+) True XLOC_030094
TCONS_00058859 other downstream 1651457 26212632 ~ 26220157 (+) False XLOC_030103
TCONS_00058863 other downstream 1659841 26221016 ~ 26233068 (+) False XLOC_030104

Expression Profile

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