RNA id: TCONS_00058824


Basic Information

Item Value
RNA id TCONS_00058824
length 640
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_030081
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 25072894 ~ 25075179 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACCAATCACTGTTGGCTTCCTTTTTACGCTCAACGTGGGAATACAGTGAGCTTGAATAAGCGACAGCACTCGATTCAAGGTCAGTGGTGCAGATAAATCACTCTGAAATGGGGGTGCTGTCTGCGCTGGCGCGGGGGTTTGTGAGAGGAGCGGACCGAATGGCGGAGTGGACTAGTAAACGTGGACCCAGGACATTCTACAAGAGCCGTGGAGCAAGACCCACTGGGATAGTCACCTCCAGCAGAAAGTTCATACCTATTCGAGCCATGATCCCAGAGTTTGTGGTACCCAATCTGGAAGGATTTAACCTAAAAGCCTATGTGTCCTACAAAACTCCAGCAGGGACGGAGGAGCCCATGACCCCAGAGAAGCTCTTCAATGAAGTGGTGGCCCCGCAGATCCAGAGGGACATTGAGGAAGGAGTTTTCAGTGAGGACAATCTGGAGAAATACGGACTGGAGAAAACTCAAGAGGGGAAGCTCTTCAAACTGCACCCCAAGAACTTTGCGCGTTAAGTGAACTTGATTTGTCTTGGACTGTAAATAAgtgtgtgatgttttaaagaacagAAGACATCACAGAGtaaacattattttgtaaatcTCCCAgtcagtaaataattaaaatatgctggaatgg

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006412 translation biological_process
GO:0007049 cell cycle biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050522-200 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to act upstream of or within apoptotic process. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL41 (mitochondrial ribosomal protein L41).

Ensembl:

ensembl_id ENSDART00000012268

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061700 lncRNA upstream 193329 24873805 ~ 24879565 (+) True XLOC_030079
TCONS_00061699 lncRNA upstream 237577 24816325 ~ 24835317 (+) True XLOC_030078
TCONS_00058822 lncRNA upstream 511719 24557130 ~ 24561175 (+) True XLOC_030077
TCONS_00058821 lncRNA upstream 516069 24552423 ~ 24556825 (+) False XLOC_030077
TCONS_00061433 lncRNA upstream 600818 24469471 ~ 24472076 (+) True XLOC_030075
TCONS_00061434 lncRNA downstream 173019 25248198 ~ 25249676 (+) True XLOC_030083
TCONS_00061701 lncRNA downstream 236084 25311263 ~ 25314751 (+) False XLOC_030085
TCONS_00061702 lncRNA downstream 625846 25701025 ~ 25710432 (+) True XLOC_030090
TCONS_00058864 lncRNA downstream 1154039 26229218 ~ 26233068 (+) True XLOC_030104
TCONS_00061435 lncRNA downstream 1404495 26479674 ~ 26481301 (+) True XLOC_030106
TCONS_00058823 mRNA upstream 186297 24882633 ~ 24886597 (+) True XLOC_030080
TCONS_00058820 mRNA upstream 505025 24543862 ~ 24567869 (+) False XLOC_030077
TCONS_00058818 mRNA upstream 540508 24520437 ~ 24532386 (+) False XLOC_030076
TCONS_00058817 mRNA upstream 763227 24305877 ~ 24309667 (+) True XLOC_030073
TCONS_00058816 mRNA upstream 778734 24287927 ~ 24294160 (+) True XLOC_030072
TCONS_00058826 mRNA downstream 9206 25084385 ~ 25087292 (+) False XLOC_030082
TCONS_00058827 mRNA downstream 9231 25084410 ~ 25087189 (+) True XLOC_030082
TCONS_00058828 mRNA downstream 229320 25304499 ~ 25309549 (+) True XLOC_030084
TCONS_00058829 mRNA downstream 236130 25311309 ~ 25314752 (+) True XLOC_030085
TCONS_00058830 mRNA downstream 241882 25317061 ~ 25358683 (+) True XLOC_030086
TCONS_00058819 other upstream 551144 24521682 ~ 24521750 (+) True XLOC_030076
TCONS_00058808 other upstream 937325 24132301 ~ 24135569 (+) False XLOC_030066
TCONS_00058805 other upstream 979027 24089324 ~ 24093867 (+) False XLOC_030065
TCONS_00058803 other upstream 981547 24086598 ~ 24091347 (+) False XLOC_030065
TCONS_00058790 other upstream 1162445 23910333 ~ 23910449 (+) True XLOC_030058
TCONS_00058834 other downstream 605663 25680842 ~ 25682105 (+) False XLOC_030089
TCONS_00058845 other downstream 736694 25811873 ~ 25812239 (+) True XLOC_030092
TCONS_00058848 other downstream 896889 25972068 ~ 25972160 (+) True XLOC_030094
TCONS_00058859 other downstream 1137453 26212632 ~ 26220157 (+) False XLOC_030103
TCONS_00058863 other downstream 1145837 26221016 ~ 26233068 (+) False XLOC_030104

Expression Profile

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