RNA id: TCONS_00000050


Basic Information

Item Value
RNA id TCONS_00000050
length 949
RNA type mRNA
GC content 0.52
exon number 9
gene id XLOC_000023
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 532766 ~ 591331 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTACCTTGCCCCCGAGTACACGCGCATGCGCACTGCAGTTCCCGCTTTGAGTCCTGTGGCGGGAGTATTGAGGAGGAGACACTGGTCTGGCGGATGAGGAAGAGCTGAGTTTACACTGCATTCATTACTGAGttTTAAAGATGAAGCCAGCGCGAGGGTCTGGAAGGGCCTCCACACGGGGCCCCAGAGGAGCTGCGGAGAGAAAAGCACACAAAACACGCCAAAAGTCCATCAGCCGTGCTGAAGGCCCACATCCTCATCTGTCTCAGAAGAGCAGCGCGATGGTTGGAAAGAGTAAAAATCAGAGAAACTGGAAGCCGCTGACCAAGTCCTCCATACTGGCCCTGAGGAACATGTTCGATATGTCCATTCTATCTGTGCTCACACTGAAAACCAAAGAGAAAGAGGAATCACAGAAACATCTCAACATCATTAAAGACCGGTTTCTGGCGAAGTGTGCGCAGCTTTCTGTTCCTCCGAGGAAACGTGGAGACATGATGAGTGCGTCGCGTCAGTTCAGCACAGAGAGTAAGAAGTCTGAACATGGAAAGAAGACGCTCCAGGCTCTAGAGGAGAACATGAGCTCGATTGTCAGCACTCTTGAGGAGATGGAGGTGAAGATGGAGAGGCTGCAGGAGAAATGCAGGATAATGAGCAGCAGAAtagaggaggaagaggaaaaaGCACAGGAGTTTCTTCAACTGTCAGAAGAAACAGTCCTGCATCTGCCAGCATTACAGTCTCGCTCAGCCGATGAGCCGACGCTACAGGAGCAGCTGATGCAGACCGTCCCCAATCCTCCAGCAGTGGTGAAGGCTCTACATCCGACTCCAGTTCTGGAGGACGTGAGGGTGTTTCTGGAGCTCGCACATAAACAGGTGGATCATGCAGAAAAAGCAGCTCACAATGACTAAACCCTGGACTGAACATCACAGACACGGCTGATG

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-6520 Predicted to enable nucleotide binding activity. Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPL39 (mitochondrial ribosomal protein L39).

Ensembl:

ensembl_id ENSDART00000179731

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003003 lncRNA upstream 174204 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA upstream 174204 355771 ~ 358562 (+) True XLOC_000018
TCONS_00002804 lncRNA upstream 291059 237391 ~ 241707 (+) True XLOC_000015
TCONS_00002803 lncRNA upstream 295343 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002802 lncRNA upstream 297233 227253 ~ 235533 (+) False XLOC_000015
TCONS_00000055 lncRNA downstream 31167 580688 ~ 586501 (+) True XLOC_000023
TCONS_00003005 lncRNA downstream 245455 794976 ~ 898180 (+) False XLOC_000026
TCONS_00003006 lncRNA downstream 245455 794976 ~ 911551 (+) True XLOC_000026
TCONS_00003007 lncRNA downstream 466291 1015812 ~ 1033638 (+) False XLOC_000028
TCONS_00002805 lncRNA downstream 466303 1015824 ~ 1023334 (+) True XLOC_000028
TCONS_00000049 mRNA upstream 337 524821 ~ 532429 (+) True XLOC_000022
TCONS_00000048 mRNA upstream 1831 524388 ~ 530935 (+) False XLOC_000022
TCONS_00000046 mRNA upstream 14690 514001 ~ 518076 (+) False XLOC_000021
TCONS_00000045 mRNA upstream 14693 513986 ~ 518073 (+) False XLOC_000021
TCONS_00000044 mRNA upstream 27149 496268 ~ 505617 (+) True XLOC_000020
TCONS_00000054 mRNA downstream 31121 580642 ~ 591331 (+) False XLOC_000023
TCONS_00000056 mRNA downstream 45063 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000057 mRNA downstream 45215 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000058 mRNA downstream 54606 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000059 mRNA downstream 412086 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000047 other upstream 17444 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000036 other upstream 238872 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000003 other upstream 519509 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000053 other downstream 26923 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 669170 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000061 other downstream 1025962 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000067 other downstream 1162632 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000068 other downstream 1168176 1717697 ~ 1723157 (+) False XLOC_000036

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_05802706_05815472.mRNA True 1723 mRNA 0.50 14 CI01000299 5802504 ~ 5815472 (-)