RNA id: TCONS_00058834


Basic Information

Item Value
RNA id TCONS_00058834
length 656
RNA type processed_transcript
GC content 0.44
exon number 2
gene id XLOC_030089
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 25680842 ~ 25694362 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGAGAGCTCAGCAGCGAAGGGGAAAGGAATTCACTTATTTACATCACCGACACAAAGCCTCGAGAGGACGACAATCTCCCTTTCGAAGAGTTCCTGTTCGTTAACCGACCGATTAGATTATAAAAGCCTCCAAGGCTTGTTCAATGGACAGATTGTCTGGAGAGGAAATCCTGGAGCAAAAGGACAAAGAAGGAAGATTAAACAAAGCCAATGCTGCTCTGTAGTTGTGGTGTTTGCAATGTGTTTGGATGTGTCATGATATTTAATGTCTTGCTATTTTTGGCTGTTCTAGTTCAGCCTGTCCTCTAAAAATCCACCCAGTTTAGTTTGAGAGATTCGACTGTCTACCTAGATACACACGAGCCCCAAAAATGCTGTCTAGATAGTAAGCTCGGTTGGTTTTGGGGTAACGTAAACGTTACAGCCACTTGTTTACATCGCGGGCAGGACTGTCCTGTAAATGGACTACTCGGTGACCTGTAATTCTCGGTTTAAAGTTATGTTAACCGCCAGCAATTACTGACGAGCGGTTATTGATCAGTGTTGTCTGTCAGCTGGTGTCGGTGCTCTCTGACTCGCATGGTTGAACACGTGAACGCTGTCCTAACAGCTTGTATGCTGCTTTTGCTTACAAATAAAAGATTAGAGATGGAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1979 Predicted to enable DNA binding activity and zinc ion binding activity. Is expressed in several structures, including blastomere; mesenchyme; mesoderm; notochord; and tail bud. Orthologous to human ZFAND5 (zinc finger AN1-type containing 5).

Ensembl:

ensembl_id ENSDART00000134242

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061701 lncRNA upstream 366091 25311263 ~ 25314751 (+) False XLOC_030085
TCONS_00061434 lncRNA upstream 431166 25248198 ~ 25249676 (+) True XLOC_030083
TCONS_00061700 lncRNA upstream 801277 24873805 ~ 24879565 (+) True XLOC_030079
TCONS_00061699 lncRNA upstream 845525 24816325 ~ 24835317 (+) True XLOC_030078
TCONS_00058822 lncRNA upstream 1119667 24557130 ~ 24561175 (+) True XLOC_030077
TCONS_00061702 lncRNA downstream 18920 25701025 ~ 25710432 (+) True XLOC_030090
TCONS_00058864 lncRNA downstream 547113 26229218 ~ 26233068 (+) True XLOC_030104
TCONS_00061435 lncRNA downstream 797569 26479674 ~ 26481301 (+) True XLOC_030106
TCONS_00058869 lncRNA downstream 1083136 26765241 ~ 26767712 (+) False XLOC_030109
TCONS_00058885 lncRNA downstream 1213929 26896034 ~ 26899985 (+) False XLOC_030114
TCONS_00058832 mRNA upstream 75174 25596234 ~ 25605668 (+) False XLOC_030088
TCONS_00058833 mRNA upstream 75241 25596238 ~ 25605601 (+) True XLOC_030088
TCONS_00058831 mRNA upstream 93229 25585869 ~ 25587613 (+) True XLOC_030087
TCONS_00058830 mRNA upstream 322159 25317061 ~ 25358683 (+) True XLOC_030086
TCONS_00058829 mRNA upstream 366090 25311309 ~ 25314752 (+) True XLOC_030085
TCONS_00058838 mRNA downstream 51669 25733774 ~ 25753202 (+) False XLOC_030091
TCONS_00058839 mRNA downstream 51709 25733814 ~ 25747774 (+) False XLOC_030091
TCONS_00058840 mRNA downstream 54874 25736979 ~ 25757578 (+) True XLOC_030091
TCONS_00058842 mRNA downstream 78007 25760112 ~ 25814650 (+) False XLOC_030092
TCONS_00058841 mRNA downstream 78007 25760112 ~ 25814650 (+) False XLOC_030092
TCONS_00058819 other upstream 1159092 24521682 ~ 24521750 (+) True XLOC_030076
TCONS_00058808 other upstream 1545273 24132301 ~ 24135569 (+) False XLOC_030066
TCONS_00058805 other upstream 1586975 24089324 ~ 24093867 (+) False XLOC_030065
TCONS_00058803 other upstream 1589495 24086598 ~ 24091347 (+) False XLOC_030065
TCONS_00058790 other upstream 1770393 23910333 ~ 23910449 (+) True XLOC_030058
TCONS_00058845 other downstream 129768 25811873 ~ 25812239 (+) True XLOC_030092
TCONS_00058848 other downstream 289963 25972068 ~ 25972160 (+) True XLOC_030094
TCONS_00058859 other downstream 530527 26212632 ~ 26220157 (+) False XLOC_030103
TCONS_00058863 other downstream 538911 26221016 ~ 26233068 (+) False XLOC_030104
TCONS_00058916 other downstream 2359879 28041984 ~ 28042519 (+) True XLOC_030128

Expression Profile

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