RNA id: TCONS_00058885


Basic Information

Item Value
RNA id TCONS_00058885
length 707
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id XLOC_030114
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 26896034 ~ 26906786 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCACCGGTAGAGGTCGCCCGAGCCACAGAAATGTTTCACCTCTCGCATTTTTTTTCACACACATTTCAGTTCAATGTTTAGTTAAACATGCATGCGCGATGTTTGTATCCTCCAACAAACTGAGTCCAAATTACTAAAACAGCAACATGTAACCAAAAGGAGTGCAGTACAGTCCTAGAGATCATTTGACATCAGCCTGCACCTGTCCATTCAACACTGGCCTCATTGAACATGCTCTAATGAAGCGGAGTGTATTACTTAGGATTTTGAAGGATATCTGCGTTGCATAAATGCGCGTGTCAGAGGAATCGTTTGTGTATGTGAGCGCAGACGGCAGACATTAAGGACACCTTCAGACATAAATTTTGACGCTGTTTGAATGAGAGGCCGTAATGTGCGTGAGGAATGATGGGCCACTTTGTGCTGAAGTGTCCTCGGTGTGCTTTTTCTTCCGTCGAGGTGTTTGTGCTGACAAAAGTGAACGGAAGAGAAAGAGCTCATTTCCTTAATTAAACAGCAGCGCGTTCTCATCAGAATGTCTGTCTCAATCAATAATTCACACCAACGCCGATTCCTTAAGTGTCTGTAGTTGATTGTAAAAGGCATGTTttaatttagttcattttgaTGTTTGAATAGTGCACAATTCATTAATTTGTAACATCTTTCCATATTAagtcatatttaataaaaaaatattaaaca

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0001510 RNA methylation biological_process
GO:0043414 macromolecule methylation biological_process
GO:0007049 cell cycle biological_process
GO:0098536 deuterosome cellular_component
GO:0008173 RNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058869 lncRNA upstream 128322 26765241 ~ 26767712 (+) False XLOC_030109
TCONS_00061435 lncRNA upstream 414733 26479674 ~ 26481301 (+) True XLOC_030106
TCONS_00058864 lncRNA upstream 662966 26229218 ~ 26233068 (+) True XLOC_030104
TCONS_00061702 lncRNA upstream 1185602 25701025 ~ 25710432 (+) True XLOC_030090
TCONS_00061701 lncRNA upstream 1581283 25311263 ~ 25314751 (+) False XLOC_030085
TCONS_00061704 lncRNA downstream 49726 26949711 ~ 27051459 (+) False XLOC_030117
TCONS_00058890 lncRNA downstream 49754 26949739 ~ 26953924 (+) False XLOC_030117
TCONS_00058889 lncRNA downstream 49754 26949739 ~ 26953924 (+) False XLOC_030117
TCONS_00061705 lncRNA downstream 49754 26949739 ~ 27051459 (+) True XLOC_030117
TCONS_00061706 lncRNA downstream 176018 27076003 ~ 27091304 (+) True XLOC_030118
TCONS_00058880 mRNA upstream 26642 26856254 ~ 26869392 (+) False XLOC_030113
TCONS_00058884 mRNA upstream 26642 26856272 ~ 26869392 (+) True XLOC_030113
TCONS_00058883 mRNA upstream 31413 26856259 ~ 26864621 (+) False XLOC_030113
TCONS_00058882 mRNA upstream 31413 26856259 ~ 26864621 (+) False XLOC_030113
TCONS_00058881 mRNA upstream 31413 26856259 ~ 26864621 (+) False XLOC_030113
TCONS_00058887 mRNA downstream 13135 26913120 ~ 26918762 (+) True XLOC_030115
TCONS_00058888 mRNA downstream 21048 26921033 ~ 26926527 (+) True XLOC_030116
TCONS_00058891 mRNA downstream 237488 27137473 ~ 27397612 (+) False XLOC_030119
TCONS_00058892 mRNA downstream 367201 27267186 ~ 27397612 (+) False XLOC_030119
TCONS_00058893 mRNA downstream 367270 27267255 ~ 27397612 (+) True XLOC_030119
TCONS_00058863 other upstream 662966 26221016 ~ 26233068 (+) False XLOC_030104
TCONS_00058859 other upstream 675877 26212632 ~ 26220157 (+) False XLOC_030103
TCONS_00058848 other upstream 923874 25972068 ~ 25972160 (+) True XLOC_030094
TCONS_00058845 other upstream 1083795 25811873 ~ 25812239 (+) True XLOC_030092
TCONS_00058834 other upstream 1213929 25680842 ~ 25682105 (+) False XLOC_030089
TCONS_00058916 other downstream 1141999 28041984 ~ 28042519 (+) True XLOC_030128
TCONS_00058938 other downstream 1912468 28812453 ~ 28818613 (+) True XLOC_030140
TCONS_00058939 other downstream 1924627 28824612 ~ 28826140 (+) True XLOC_030141
TCONS_00058952 other downstream 2314545 29214530 ~ 29214646 (+) True XLOC_030148
TCONS_00058961 other downstream 2894091 29794076 ~ 29799058 (+) True XLOC_030154

Expression Profile

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