Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00058897 |
| length | 1145 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 6 |
| gene id | XLOC_030121 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 27421025 ~ 27429216 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005764 | lysosome | cellular_component |
| GO:0005765 | lysosomal membrane | cellular_component |
| GO:0005768 | endosome | cellular_component |
| GO:0031902 | late endosome membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060526-374 | Predicted to enable transmembrane ascorbate ferrireductase activity. Predicted to be involved in cellular iron ion homeostasis. Predicted to be located in late endosome membrane. Predicted to be active in lysosomal membrane. Orthologous to human CYB561A3 (cytochrome b561 family member A3). |
| ensembl_id | ENSDART00000146285 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061706 | lncRNA | upstream | 330335 | 27076003 ~ 27091304 (+) | True | XLOC_030118 |
| TCONS_00061704 | lncRNA | upstream | 370180 | 26949711 ~ 27051459 (+) | False | XLOC_030117 |
| TCONS_00061436 | lncRNA | downstream | 225034 | 27654250 ~ 27654718 (+) | True | XLOC_030126 |
| TCONS_00058914 | lncRNA | downstream | 488163 | 27917379 ~ 27920706 (+) | True | XLOC_030127 |
| TCONS_00061707 | lncRNA | downstream | 852953 | 28282169 ~ 28287958 (+) | False | XLOC_030132 |
| TCONS_00058922 | lncRNA | downstream | 853233 | 28282449 ~ 28287958 (+) | False | XLOC_030132 |
| TCONS_00061708 | lncRNA | downstream | 853233 | 28282449 ~ 28292411 (+) | True | XLOC_030132 |
| TCONS_00058895 | mRNA | upstream | 6558 | 27404946 ~ 27415081 (+) | True | XLOC_030120 |
| TCONS_00058894 | mRNA | upstream | 6581 | 27404946 ~ 27415058 (+) | False | XLOC_030120 |
| TCONS_00058891 | mRNA | upstream | 24027 | 27137473 ~ 27397612 (+) | False | XLOC_030119 |
| TCONS_00058898 | mRNA | downstream | 656 | 27429872 ~ 27430247 (+) | True | XLOC_030122 |
| TCONS_00058899 | mRNA | downstream | 3742 | 27432958 ~ 27434351 (+) | True | XLOC_030123 |
| TCONS_00058900 | mRNA | downstream | 5385 | 27434601 ~ 27488756 (+) | False | XLOC_030124 |
| TCONS_00058901 | mRNA | downstream | 11109 | 27440325 ~ 27489109 (+) | False | XLOC_030124 |
| TCONS_00058902 | mRNA | downstream | 11119 | 27440335 ~ 27487789 (+) | False | XLOC_030124 |
| TCONS_00058863 | other | upstream | 1188571 | 26221016 ~ 26233068 (+) | False | XLOC_030104 |
| TCONS_00058859 | other | upstream | 1201482 | 26212632 ~ 26220157 (+) | False | XLOC_030103 |
| TCONS_00058848 | other | upstream | 1449479 | 25972068 ~ 25972160 (+) | True | XLOC_030094 |
| TCONS_00058845 | other | upstream | 1609400 | 25811873 ~ 25812239 (+) | True | XLOC_030092 |
| TCONS_00058834 | other | upstream | 1739534 | 25680842 ~ 25682105 (+) | False | XLOC_030089 |
| TCONS_00058916 | other | downstream | 612768 | 28041984 ~ 28042519 (+) | True | XLOC_030128 |
| TCONS_00058938 | other | downstream | 1383237 | 28812453 ~ 28818613 (+) | True | XLOC_030140 |
| TCONS_00058939 | other | downstream | 1395396 | 28824612 ~ 28826140 (+) | True | XLOC_030141 |
| TCONS_00058952 | other | downstream | 1785314 | 29214530 ~ 29214646 (+) | True | XLOC_030148 |
| TCONS_00058961 | other | downstream | 2364860 | 29794076 ~ 29799058 (+) | True | XLOC_030154 |
