RNA id: TCONS_00061723


Basic Information

Item Value
RNA id TCONS_00061723
length 629
lncRNA type antisense_over
GC content 0.47
exon number 5
gene id XLOC_030177
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 30780430 ~ 30974079 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCACCGTGGATAGGGTGACTTGAAGCATTCTGCAGCAAGCACACTGACAAACTGTTCACACAGCGTCGTGTCTTGATCATCTTCACCTATAGAGAGCGCTACGAGCTCCACTGATGACCTAGTTCTTCTCCATCTTTATCCATGAAGAACCGAAGATGGACACAGATGAACAGGTGCAGACCGCACCGCTTTTTATCATCAATTATCAAAGGAGACGCTATTGGCTTCAAGGATAGTTCCTGTCTCCTTCAGTTCTCCATCTGATTCCACACAGTCTCACTTTCTTCTGTGCCACATACTGGTTGAACGTCATCATCCCGAAAAGagcTGGCGGATATTTTTTTGTGCGACTGAAGTACGTCAAAGCCATCATCACACCAGCCTGTCAGACCTCCGGAGTGAAATTATCAAGTAACTGTTGATGCATGACTTGTCCCAGCATTCCTGGATTTGACAAGCCAGATTGCCCACACACTTCCTCTGAAGGTGTATGCAGTCACTATCTTAGAGATCAAAATCCAGCCCAGTATTAGTGCACGAGATGCCAACTGGACACCTAAGCAGCCAGGACTACCCACAGGTTTGAGAGAGCTCTATAGCTGCTTCTACAATTACACAGCATATGGG

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0019184 nonribosomal peptide biosynthetic process biological_process
GO:0017109 glutamate-cysteine ligase complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059000 lncRNA upstream 52782 30723983 ~ 30727648 (+) True XLOC_030174
TCONS_00061722 lncRNA upstream 55811 30723268 ~ 30724619 (+) False XLOC_030174
TCONS_00061719 lncRNA upstream 791999 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061718 lncRNA upstream 791999 29902153 ~ 29988431 (+) False XLOC_030159
TCONS_00061717 lncRNA upstream 827514 29902153 ~ 29952916 (+) False XLOC_030159
TCONS_00061728 lncRNA downstream 35398 30952223 ~ 30954521 (+) True XLOC_030178
TCONS_00059025 lncRNA downstream 896511 31813336 ~ 31816836 (+) True XLOC_030188
TCONS_00059031 lncRNA downstream 950693 31867518 ~ 31868369 (+) True XLOC_030190
TCONS_00061729 lncRNA downstream 988022 31904847 ~ 31912078 (+) True XLOC_030191
TCONS_00061730 lncRNA downstream 994178 31911003 ~ 31918136 (+) True XLOC_030192
TCONS_00059005 mRNA upstream 9623 30759232 ~ 30770807 (+) True XLOC_030176
TCONS_00059003 mRNA upstream 27263 30741788 ~ 30753167 (+) False XLOC_030175
TCONS_00059002 mRNA upstream 27263 30741788 ~ 30753167 (+) False XLOC_030175
TCONS_00059001 mRNA upstream 30937 30741730 ~ 30749493 (+) False XLOC_030175
TCONS_00058997 mRNA upstream 78539 30699260 ~ 30701891 (+) True XLOC_030173
TCONS_00059007 mRNA downstream 69687 30986512 ~ 30995108 (+) True XLOC_030179
TCONS_00059008 mRNA downstream 79497 30996322 ~ 31029436 (+) False XLOC_030180
TCONS_00059009 mRNA downstream 81939 30998764 ~ 31030833 (+) False XLOC_030180
TCONS_00059010 mRNA downstream 81939 30998764 ~ 31030840 (+) True XLOC_030180
TCONS_00059011 mRNA downstream 120086 31036911 ~ 31109968 (+) False XLOC_030181
TCONS_00059004 other upstream 31389 30743846 ~ 30749041 (+) True XLOC_030175
TCONS_00058998 other upstream 52782 30723129 ~ 30727648 (+) False XLOC_030174
TCONS_00058999 other upstream 53813 30723910 ~ 30726617 (+) False XLOC_030174
TCONS_00058994 other upstream 110161 30669121 ~ 30670269 (+) True XLOC_030171
TCONS_00058990 other upstream 171892 30607838 ~ 30608538 (+) False XLOC_030170
TCONS_00059020 other downstream 631487 31548312 ~ 31548787 (+) True XLOC_030185
TCONS_00059030 other downstream 943246 31860071 ~ 31868628 (+) False XLOC_030190
TCONS_00059033 other downstream 1027782 31944607 ~ 31944722 (+) False XLOC_030193
TCONS_00059050 other downstream 1261805 32178630 ~ 32182728 (+) True XLOC_030200
TCONS_00059060 other downstream 1428364 32345189 ~ 32346131 (+) True XLOC_030205

Expression Profile

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