Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00059035 |
| length | 753 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 6 |
| gene id | XLOC_030193 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 31944270 ~ 31952788 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006974 | cellular response to DNA damage stimulus | biological_process |
| GO:0097510 | base-excision repair, AP site formation via deaminated base removal | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0006284 | base-excision repair | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0004844 | uracil DNA N-glycosylase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070705-360 | Predicted to enable uracil DNA N-glycosylase activity. Predicted to be involved in base-excision repair, AP site formation via deaminated base removal. Predicted to act upstream of or within base-excision repair. Predicted to be active in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in dysgammaglobulinemia and immunodeficiency with hyper IgM type 5. Orthologous to human UNG (uracil DNA glycosylase). |
| ensembl_id | ENSDART00000163366 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061730 | lncRNA | upstream | 28857 | 31911003 ~ 31918136 (+) | True | XLOC_030192 |
| TCONS_00061729 | lncRNA | upstream | 34915 | 31904847 ~ 31912078 (+) | True | XLOC_030191 |
| TCONS_00059031 | lncRNA | upstream | 78624 | 31867518 ~ 31868369 (+) | True | XLOC_030190 |
| TCONS_00059025 | lncRNA | upstream | 130157 | 31813336 ~ 31816836 (+) | True | XLOC_030188 |
| TCONS_00061728 | lncRNA | upstream | 992472 | 30952223 ~ 30954521 (+) | True | XLOC_030178 |
| TCONS_00059039 | lncRNA | downstream | 32021 | 31983191 ~ 31994554 (+) | True | XLOC_030195 |
| TCONS_00061731 | lncRNA | downstream | 132559 | 32083729 ~ 32086577 (+) | True | XLOC_030198 |
| TCONS_00061732 | lncRNA | downstream | 308993 | 32260163 ~ 32263220 (+) | False | XLOC_030204 |
| TCONS_00059058 | lncRNA | downstream | 308993 | 32260163 ~ 32264060 (+) | True | XLOC_030204 |
| TCONS_00061733 | lncRNA | downstream | 407710 | 32358880 ~ 32367481 (+) | True | XLOC_030206 |
| TCONS_00059028 | mRNA | upstream | 78146 | 31860043 ~ 31868847 (+) | False | XLOC_030190 |
| TCONS_00059029 | mRNA | upstream | 78443 | 31860053 ~ 31868550 (+) | False | XLOC_030190 |
| TCONS_00059027 | mRNA | upstream | 120420 | 31820264 ~ 31826573 (+) | True | XLOC_030189 |
| TCONS_00059026 | mRNA | upstream | 120715 | 31819436 ~ 31826278 (+) | False | XLOC_030189 |
| TCONS_00059024 | mRNA | upstream | 129598 | 31811662 ~ 31817395 (+) | False | XLOC_030188 |
| TCONS_00059036 | mRNA | downstream | 8784 | 31959954 ~ 31980518 (+) | False | XLOC_030194 |
| TCONS_00059037 | mRNA | downstream | 14675 | 31965845 ~ 31981195 (+) | True | XLOC_030194 |
| TCONS_00059038 | mRNA | downstream | 31928 | 31983098 ~ 31995401 (+) | False | XLOC_030195 |
| TCONS_00059040 | mRNA | downstream | 44513 | 31995683 ~ 32046297 (+) | False | XLOC_030196 |
| TCONS_00059041 | mRNA | downstream | 56457 | 32007627 ~ 32043616 (+) | False | XLOC_030196 |
| TCONS_00059033 | other | upstream | 2271 | 31944607 ~ 31944722 (+) | False | XLOC_030193 |
| TCONS_00059030 | other | upstream | 78365 | 31860071 ~ 31868628 (+) | False | XLOC_030190 |
| TCONS_00059020 | other | upstream | 398206 | 31548312 ~ 31548787 (+) | True | XLOC_030185 |
| TCONS_00059006 | other | upstream | 1120101 | 30780600 ~ 30826892 (+) | True | XLOC_030177 |
| TCONS_00059004 | other | upstream | 1197952 | 30743846 ~ 30749041 (+) | True | XLOC_030175 |
| TCONS_00059050 | other | downstream | 227460 | 32178630 ~ 32182728 (+) | True | XLOC_030200 |
| TCONS_00059060 | other | downstream | 394019 | 32345189 ~ 32346131 (+) | True | XLOC_030205 |
| TCONS_00059063 | other | downstream | 686478 | 32637648 ~ 32637765 (+) | True | XLOC_030208 |
| TCONS_00059074 | other | downstream | 907258 | 32858428 ~ 32859254 (+) | True | XLOC_030210 |
| TCONS_00059077 | other | downstream | 931537 | 32882707 ~ 32886909 (+) | False | XLOC_030211 |
