RNA id: XR_005041782.1



Basic Information


Item Value
RNA id XR_005041782.1
length 403
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC118947129
representative True

Chromosome Information


Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 595503 ~ 596337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGAGGTATAGCAGagagggaacagtagaacactatacagacagagatatagcagagagggaacagtagaacactatacaGACAGAGagggaacagtagaacactatacaGACAGAGGTATAGCAGagagggaacagtagaacactatacaGACAGAGagggaacagtagaacactatacagacagagagggaacagtagaacactatacaGACAGAGGTATAGCAGagagggaacagtagaacactatacagacagagagggaacagtagaacactatacaGACAGAGagggaacagtagaacactatacaGACAGAGGTATAGCAGagagggaacagtagaacactatacaGACAGAGGTATAGCAGagagggaacagtagaacactatacaGACAGAGGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2678531 lncRNA upstream 6951 572707 ~ 588552 (+) False G2339522
TU2678532 lncRNA upstream 10369 572707 ~ 585134 (+) True G2339522
TU2678526 lncRNA upstream 40592 554236 ~ 554911 (+) True G2339518
TU2678525 lncRNA upstream 42060 552813 ~ 553443 (+) True G2339517
TU2678524 lncRNA upstream 42298 552813 ~ 553205 (+) False G2339517
TU2678552 lncRNA downstream 11999 608336 ~ 609001 (+) False G2339532
TU2678557 lncRNA downstream 11999 608336 ~ 610581 (+) True G2339532
TU2678574 lncRNA downstream 59144 655481 ~ 657445 (+) True G2339547
TU2678578 lncRNA downstream 61465 657802 ~ 658162 (+) True G2339548
TU2678586 lncRNA downstream 79499 675836 ~ 676782 (+) True G2339554
XM_036972373.1 mRNA upstream 290262 107069 ~ 305241 (+) False LOC118947131
XM_036972394.1 mRNA downstream 166242 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 215150 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 215150 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 215150 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA downstream 216202 812539 ~ 817121 (+) True si:ch73-41e3.7
TU2678479 other upstream 131036 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 497647 97115 ~ 97856 (+) True G2339343
TU2678903 other downstream 87007 683344 ~ 685548 (+) True G2339795
TU2679051 other downstream 274770 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 274770 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 274770 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 274770 871107 ~ 873839 (+) False G2339912

Expression Profile