RNA id: XM_036972394.1


Basic Information

Item Value
RNA id XM_036972394.1
length 2669
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110495334
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 762579 ~ 768787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGCCACTCCTTCCTCTTTACTccgtccttccctctctctctctctctctctctctctctctctctcgctttttcaGAAGAACAGGGCGTCCGACAGACGCAGAGAGGCAGGTCTCCTCACTGCAGCTCCAGGCCTATATCTTCCTATCTGAGCCACTATGAACCTTGTGAACAGCAGCCAGTGGTTCCTGACCCAGCCGTCTCCCAGCCCAGCAGGACCCAGTAAAGGACTGGGCTGTAGTAATACCTGGCAGGCAGAGACAGGCCGCATCACTCAGATGATAATCACCGTGCTCATCTTCCTGGTGGGCGTGTCCTTGAACACCCTAGTGGTGTATGCGTTGGCCTGGCGTGGGCGTGGCCGCCTGACGAGGCGTGGCAGCTTGGGCCAAGGGGAGACGCGCGGCGCCAGCAGCTTCCGTGTCTACGTCGTGAACCTGGCGCTGGCtgacctggtcctcctcctccgcaCCCCTCTGATGCTGGCGTACCTGGCCCACAGCTGTAGCTGGCCCGTGGGGAAACTGGCCTGTCGCCTGGTGGTATTCCTGAGAGGCTTGGGACTATACGCTGCAGCCTTCCTGCTGTGTGCCGTGGCTGTGGAGAGATGTCTGTGTCTCCTCAGGCCGGTCTGGTCCAGTCTGAAGCGTCCTCGCTGGGCAGTTCCCCTGGTGTGTGGTCTCCTCTGGGGGCTGGCTGCTGCCCTGGCTACCCCTTACCTCCACACTGCCGACCTGCTGGAGATCAACGGTACTACCCAGTGTCTGGAGAGCCTGGGGTACAGCACGGGGCTGTTTGTGACCGAGACGGTGGCCGGGTTCCTCCTGCCACTAACGGTGTTCCTGGTGAGTAACGTAGCCGTGCTGTGGACCGCCAGGCAGGCAGGGGTCTCCGGACCgacctctccatcctcctcttcggCGACTGCGAGACAGATGGCCAGACTGTACCGGGTCCTCTTCCTCACCatgcttctcttcctctcctgctgGGTCCCCTACTTTACCTGCCGCTTCCTGCGGGCGCTGGCTGCAGGGCGGCCTGACCGGACGGGGCTCTACCGGGCGTCGTTCACGGGGGCATACGTCTCTCTGTTCCTGGTGTACCTGAAGAGCTCCCTGAACCCTGTCCTCTACGTGTTCGCCGCCCGAGGCCTGGGGCGAACCGTCCGCGCCTCGCTCCCCTCCACCATTGAGAGAGTCTTCAACGATGACTATTCTGACTCCAGGAGTAGACGGACCATAAGGAGGGAGGATTCACAGATCTAGTGCCCTAAAAAGCCCTGTTATAGGGACCGTACATATGGGAGATTCACAGATCTAGTGCCCTAAAAAGCCCTATTAGGGACCGTACATATGGGAGATTCACAGATCTAGTGCCCTAAAAAGCCCTATTAGGGACCGTACATATGGGAGATTCACAGATCTAGTGCCCTAAAAAGCCCTATTAGGGACCGTACATATTGGAGATTCACAGATCTAGTGCCCTAAAAAGCCCTATTAGGGACCGTACATATTGGAGATTCACCGATCTAGTGCTCCAGAATCCTGTTAAAGACCTTGCATGTTTTACTAGCAGACTGTAGAGATCCATTGTGACTGCTGGCCAACATGAACTCAGACGTTACAGGCTTACTTCAGCCCCGTGTGGACTACATGGACTGCATTATTATAGCTATAGGCATTATCTTAGGCTTGGTGACAGGCTTGCTTCAGCCCTGTCTGGTCTACATTATCAGGACTATATTGCATTATCTTAGGCTGGGTGACAGGCTTGCTTCAGCCCTGTCTGGTCTACATTATCAGGACTATATTGCATTATCTTAGGCTGGGTGACAGTCTTGCTTCAGCCCTGTCTGGACTACATTATCAGGACTACATTGCATTATCTTAGGCTGGGTGACAGGCTTGCTTCAGCCCTGTCTGGACTACATTATCAGGACTATATTGCATTATCTTAGGCTGGGTGACAGGCTTGCTTCAGCCCTGTCTGGACTACATTATCAGGACTATATTGCATTATCTTAGGCTTGGTGACAGGCTTGCTTCAGCCCTGTCTGGACTACATTATCAGGACTATATTGCATTATCTTAGGCTCGGTGACAGGCTTGCTTCAGCCCAATGGCGTCATCAGACCTGGGCTTTCTGGGATTTAGCCCCGAGTCTTGGTGTAAAACAAGCTCAGCTacactgcattacacactgcaacGAACTCTCCAATCATGAGCCCTGTCCTGGCCTGCCTCTTCAGTGATGCCTAAAACCACCATTTCTGTGTACGGTGGCACTTTAGGAGGCCCGAGTCACAGTGATTTATCATCTCGCTACATGGTAGATGGGTTGGCTGCCAACGATGTGCGCTCCTCCTCAGcctgttgtggttctggatggccagacTGCTCGCAAGAGAGACACTGTCATTAGAAGGAATCAATCAGGGCTTATTTCAGCATGTTTCatcttgttattgataccatgttgtgttttgaggtgttttgactgatttcatgtcaatgcaaatgtattttttaaaaaaacaaacgtGTGATAACTTGCTCACCgtcaactgtaatgatgtatctGAAACAACAAGGTCATTGTGcaaatgttgttttgttttttccttcCAATAAACATcggagactaaatatagtttcCACGTTAACAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678986 lncRNA upstream 7506 753948 ~ 755073 (+) False G2339859
TU2678988 lncRNA upstream 7506 753948 ~ 755073 (+) True G2339859
TU2678981 lncRNA upstream 8895 751848 ~ 753684 (+) False G2339858
TU2678985 lncRNA upstream 8895 751848 ~ 753684 (+) True G2339858
TU2678980 lncRNA upstream 9475 751848 ~ 753104 (+) False G2339858
TU2679007 lncRNA downstream 24948 793735 ~ 796273 (+) False G2339875
TU2679005 lncRNA downstream 27743 796530 ~ 797599 (+) True G2339875
TU2679023 lncRNA downstream 56341 825128 ~ 826439 (+) True G2339891
TU2679028 lncRNA downstream 63018 831805 ~ 832307 (+) True G2339896
TU2678998 lncRNA downstream 66161 834948 ~ 838462 (+) True G2339869
XR_005041782.1 mRNA upstream 166242 595503 ~ 596337 (+) True LOC118947129
XM_036972373.1 mRNA upstream 457338 107069 ~ 305241 (+) False LOC118947131
XM_036972370.1 mRNA downstream 42700 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 42700 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 42700 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA downstream 43752 812539 ~ 817121 (+) True si:ch73-41e3.7
XR_005041788.1 mRNA downstream 176665 945452 ~ 946013 (+) False LOC118947137
TU2678903 other upstream 77031 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 298112 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 664723 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 102320 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 102320 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 102320 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 102320 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 203692 972479 ~ 972783 (+) True G2339955

Expression Profile