RNA id: XR_005041785.1


Basic Information

Item Value
RNA id XR_005041785.1
length 2031
RNA type mRNA
GC content 0.52
exon number 5
gene id si:ch73-41e3.7
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 811487 ~ 817841 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTCGCGCACTATGTCATGCACCTTGACCTATAGATGGGGGTTGAGTCGTCGCGTCGTCGCTTTTCGTTTGTAGCTTCCATCTGTCAAAGCATCATCGGAGCGGTCATTACTAATATTCAGTCGAGAGTAAAGTAACGTTTAGTGCCTTTTCTCATTGGCTTCTTTGGGTTATTGGATACAACTGGTCGCCAGAACGCATACAGCGACTATTTTTGGCTGACGAGTGCCACAAACGCATCACTTTAGCCAGGATGGAGTTAATATTGGACACCGCTAAGAGCCAGGGTCAGACCCAGAGCCAGGGGGGTCAgactgtctcccctccctcaatCTTCCCCTATCGCTTCACCTCGGACGGGCGTCTGTGTCACCGGGTCACCCAGGAGCCCTTCATGTTCCAGCGGAGCTGTGACCCAGACGCCGCAAAGAGAGAGGACCAGGCCTTATGTCTCCACATCACCCAACACGTTCACTCTCTCCTGGAGGAGCAGCTGCACCTCTTCAGGCTCTACCTCCCACCCCTCAGCAAAGAggtctacctccctcctccaccccacaGCAAGGGggtctacctccctcctccatctctcagcAAGGGggtctacctccctcctccaccagagCCTCAGGGGGACCACAGGGTCTACTTTAGCCCCCACCGAGGAGCCCCCAGCCAGGGCTACGTGTACCTCTCCCCTGGGGCCCTGGAGAGCCCTGCCACCCTGTTGGTGGTGGTCCAGGACCGGGGAACGATGCGCTGCGGGCTGTGGAGCTGGAGGGCTGCTGCCAGCCGAGGTCTGGAAAGAGGCAGCATGATCCCCTACGTGAAGAGGGTCCTAGAAGAGGGCAGCTCTGTCCTCCTGATGAACCCCAACCAGGGAGGAGGTGTTGGGGAGACTCCGGAGGAGCACGTTCACCGTGTCTGGGACCTCCTGGTGTCGCGCTGCGTCTCCCGGCGTGTCGTCGTGGTAGCGCACGGTTATGGAGGCCTGGCGTTCGTGGACCTGCTGTGCCGACGCCCACAACAAGTGGTGGGGCAGGTGTGGGCGGCGGCCTTTCTGGACTCCTCCCACAGCCTGTGGCACCAGCAGTTGGACGCGGTGGGCCGGGAGTGGCTGAGGACACGCTCTAGGAGGTGGGTACTGAGCTCCAAGCCCCTGAACCAGCCGGTGGGGTCGCTGAAAGCAGGATGCCCTCAGATGTCAGCTGGGACACAGAGTCATGACGCGGCTCCATCTGTCTGCATGGAGTCTGTGTTCAGGTTCTTCTCCAAAACGCTGAGTCCTAAACCACCCACCACCTTCAGTATGGTGACCCGCAGCAGGGGCACAGTGGGACAGATCAGACCTCACAACGGGAGAGGCATCACCAGGCCTTATTGACAGCACCAGTGAAGTACAGGAGTACAGTGGGAATTGAGTATTTATCTTACGGTCAGAAAGACACGTGTCTAATTCACGCGAATACATTTTCCTGGACTCTGGATGAGgtcatcCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCATCCTAAATATTTAGTGTCATTTTGTTAAGACACTCCAGGTCCTCCTAAATATTTAGTGTAATTTTGTTAAGACACTCCAGGTCCTCCTAAAtatgtagtgtcattttgttaaGACACTCCAGGTCCTCCTAAATATTTAGTTTCATTGTGTTAAGACTCTCCAGGGTCGGACTTGTCGATAGCAGATTGtggataaatactttttttcatcTTACTATCTGTGAAATACTAAAGACATTTAAAGACATGTAAAATGCGTTTTTTTTGGCACATttatacaaataaaatgttatctaGAATAAAAAATGTACCGCATTTATCAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679005 lncRNA upstream 13888 796530 ~ 797599 (+) True G2339875
TU2679007 lncRNA upstream 15214 793735 ~ 796273 (+) False G2339875
TU2678986 lncRNA upstream 56414 753948 ~ 755073 (+) False G2339859
TU2678988 lncRNA upstream 56414 753948 ~ 755073 (+) True G2339859
TU2678985 lncRNA upstream 57803 751848 ~ 753684 (+) True G2339858
TU2679023 lncRNA downstream 7287 825128 ~ 826439 (+) True G2339891
TU2679028 lncRNA downstream 13964 831805 ~ 832307 (+) True G2339896
TU2678998 lncRNA downstream 17107 834948 ~ 838462 (+) True G2339869
TU2679032 lncRNA downstream 23665 841506 ~ 843332 (+) False G2339899
TU2679033 lncRNA downstream 23665 841506 ~ 842550 (+) True G2339899
XM_036972394.1 mRNA upstream 42700 762579 ~ 768787 (+) True LOC110495334
XR_005041782.1 mRNA upstream 215150 595503 ~ 596337 (+) True LOC118947129
XM_036972373.1 mRNA upstream 506246 107069 ~ 305241 (+) False LOC118947131
XR_005041788.1 mRNA downstream 127611 945452 ~ 946013 (+) False LOC118947137
XM_036972352.1 mRNA downstream 161752 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 161752 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 161753 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 384196 1202037 ~ 1208674 (+) False blzf1
TU2678903 other upstream 125939 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 347020 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 713631 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 53266 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 53266 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 53266 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 53266 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 154638 972479 ~ 972783 (+) True G2339955

Expression Profile