RNA id: XR_005041788.1


Basic Information

Item Value
RNA id XR_005041788.1
length 430
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC118947137
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 945293 ~ 946912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgacagtacagtagactacagtagactagTCTTATTGTAAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactagtcCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactagtcCTATTGTAGGTAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGTAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactaaTCCTATTGTAGGGAGGTTATAGGTTCTAGTGAGGTTGgtgacagtacagtagactacagtagactagTCCTATTGTAGGTAGGTTATAGGTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679120 lncRNA upstream 13457 931131 ~ 931995 (+) True G2339940
TU2679111 lncRNA upstream 33196 911803 ~ 912256 (+) True G2339933
TU2679094 lncRNA upstream 40616 902593 ~ 904836 (+) True G2339926
TU2679053 lncRNA upstream 44612 871107 ~ 900840 (+) False G2339912
TU2679074 lncRNA upstream 46270 898335 ~ 899182 (+) True G2339913
TU2679159 lncRNA downstream 8547 954560 ~ 954846 (+) True G2339958
TU2679161 lncRNA downstream 25189 971202 ~ 971435 (+) True G2339960
TU2679164 lncRNA downstream 32226 978239 ~ 978444 (+) True G2339962
TU2679170 lncRNA downstream 44463 990476 ~ 991728 (+) True G2339966
TU2679172 lncRNA downstream 60617 1006630 ~ 1008051 (+) True G2339968
XM_036972372.1 mRNA upstream 127611 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 127611 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 128331 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 128331 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972394.1 mRNA upstream 176665 762579 ~ 768787 (+) True LOC110495334
XM_036972352.1 mRNA downstream 33580 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 33580 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 33581 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 256024 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 256054 1202067 ~ 1208674 (+) False blzf1
TU2679051 other upstream 71613 871107 ~ 873839 (+) False G2339912
TU2679060 other upstream 71613 871107 ~ 873839 (+) False G2339912
TU2679067 other upstream 71613 871107 ~ 873839 (+) False G2339912
TU2679071 other upstream 71613 871107 ~ 873839 (+) False G2339912
TU2678903 other upstream 259904 683344 ~ 685548 (+) True G2339795
TU2679153 other downstream 26466 972479 ~ 972783 (+) True G2339955
TU2679430 other downstream 170930 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 170930 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 261245 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 333882 1279895 ~ 1301250 (+) True pibf1

Expression Profile