RNA id: XM_036972352.1


Basic Information

Item Value
RNA id XM_036972352.1
length 5165
RNA type mRNA
GC content 0.53
exon number 29
gene id tpp2
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 979593 ~ 1046298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTCCCTTTAAAAAAAAGTCCTTCCCGGTCTCTCTTCACTGTTTTTACCGGCCACGTTTCCCCCCTCTAAACTATACTGTACTTACTTGTCTTTGGTGTCGGTCTTCAACCTATTTCTCTGCTCTTGTTTCCATTGTTACTCTGTCCGATCATGGCAGCTCATTCTATCGACGAACCGTTCCCTTTCCACGGGTTGCTCCCTAAAAAAGAGACCGGCGCTGCGTCTTATCTCACTAGGTTCCCCGAGTACGATGGACGGGGTGTTGTCATCGCTATCCTCGACACTGGCGTGGACCCAGGGGCCCCGGGCATGCAGacCACGACGGAGGGCAAGCCGAAGATCGTTGACATCATCGATACGACGGGCAGTGGAGATGTCACCATGGCGACGGTGGTGGAGCCTAAAGACGGAGAGGTGACCGGGCTGTCCGGGAGGACGCTCAAGatCCCTCATGCCTGGGATAATCCATCAGGAAAGTACCACATTGGGATCAAAAATGGATATGAGTTGTTCCCTAAAGCTCTCCGAGAGAGAATCCAGAAAGAGCGGAAGGAGAAAATGTGGGATCCAGCACACAGAGCAGCTCTGGCCGAAGCCAGTCGTCGGGCAGAACAGTTTGACCTTGctcacccctccccctcacagGCTGAGAAGCTGCAGAAGGAGGAGCTGCTGTGTCAGTCCGAGATCCTGGCGTCTCTGGAGAAGAAGTACAACGACCCGGGTCCGGTCTACGACTGTCTGCTGTGGAACGACGGAGACACCTGGAGGGCTGTGGTAGACACCTCAGAGACTGGAGACCTGTCCAGCTGCACGGTCCTGACCTCCTACAGAGAGAAGCAGGAGTTTGCTACTCTGGGAAACGCTGAGATGCTCAACTACTCCGTTAACATCTACGACGAAGGAAACACTCTCTGCATCGTCACCAGCGGAGGGGCTCATGGGACACACGTGGCGAGCATAGCAGCAGGCCACTTCCCAGATGAGCCGGAGCGGAACGGCATTGCCCCCGGCGCCCAGATCCTGGCGTTGAAGATCGGAGACACGCGCCTCAGCACCATGGAGACAGGCACCGGACTCATCCGCGCGatgATAGAGGTGATCAACTATAAATGTGACCTGGTTAACTACAGCTATGGAGAAGCTACCCACTGGCCCAACTCAGGGAGGATCTGTGAGGTGATTGGGGAAGCGGTTCAGAAACACAACGTATTGTTTGTGTCCAGCGCTGGGAACAACGGgccctgtctgtctactgtcggCTGTCCTGGAGGgactactgctgctgttatagGCGTGGGGGCGTATGTGACTCCAGACATGATGGTTGCAGAGTATTCTCTGAGAGAGAAGCTTCCTCCGAACCAGTACACCTGGTCGTCTCGGGGCCCCAGTACCGACGGGGCCCTGGGGGTCAGTATCACCGCTCCGGGGGGGGCCATCGCCTCCGTACCCAACTGGACTCTCAGAGGAACCCAGCTGATGAATGGTACCTCCATGTCGTCCCCCAACGCCTGTGGAGGGATCGCCCTGGTGCTGTCAGGTCTGAAGCAGAACGGTATCCGTCCATCGGTCTCTGCGGTGAGGAGAGCTCTGGAGAACACGGCTCTGAAGGTCGACGACATCGAGGTGTTCGCACAGGGACACGGAATCATACAGGTGGACAGAGCTGTAGACTACCTGACCCAGCATGCCTCTCTCCCCACCGCTAACCTGGGCTTCACTGTTACCGTGGGAACGCAGCGAGGCATCTACCTCCGAGACCCCAACCAGGTCCTGTCCCCCTCCGACCATGGGGTTGGCATCGAACCCGTTTTCCCCGAAAATACCGAGAACACGGAGCGTATTTCTCTGCAACTGCACCTGGCCCTGACATGCTCCGCCTCCTGGGTGCAGTGTCCCTCCCACCTGGAGCTCATGAACCAGTGTCGTCATGTCAACGTCAGAGTCGATCCCCTGGGGCTCCGAGAGGGACTGCattatactgagGTGTGTGGTTATGACACCGCGTCCCCCAGCTCTGGCCCTCTGTTCAGAGTCCCCATAACGGTAATCATCCCCACCAAagttCCTGAGGGCCACAGTCAGGAGGTTCTGTTCACAGATGTCCACTTCAGACCAGGACAGATTCGACGACACTTCATCACGGTTCCACGGGGAGCCTCCTGggcagagATAACATTGACGTCTCAGAGTGGGGACGTGTCCTCTAAGTTTGTCCTCCATGCGGTCCACCTGGTGAAGCAGAGAGCTTACAGAGCCAACGAGTTCTACAAgttctcctctctgctggagAAGAGCTCCCTGACTGAAGCTTTCCCTGTCCTGtcagggaGGACAGTAGAGTTATGTGTCGCCCGGTGGTGGGCCAGCCTTGGTGACGTCACCGTTGACTACAGCATCTCCTTCCACGGCCTGACCACCTCACCCTCACCTCTACACATACATGCATCAGACGGCGTGACTAGTTTTGAGGTGTCCTCTCCCCTGAGGTACGAGGACGTTTCTCCCAGCATCACCCTGAAGACTTGGGTCCAGCCACTCAGACCTCTGAGTTCTAAGATCAAGGCCCTGGGTCACAGAGATGTCCTCCCCAACAACAGACAACTCTACGAAATCATCCTCACCTACAGCTTCCACCAGccTAAGTCAGGAGAGGTGACCCCCAGCTGTCCAGTACTGTGTGACCAGTTGTATGAATCAGAGTTTGACTCTCAGCTCTGGATGCTGTTTGACCAGAACAAGAGACTACTGGGCTCTGGAGACGCCTACCCACACCAGtacTCTCTGAAACTAGAGAAAGGTGACTACACGCTGCGTCTGCAGGTGCGTCATGAGCAGGCCAGTGAGCTGGAGCGTCTGAAGGACCTTCCGTTTGTGGTGTCCCACCGTCTGTCCACTACTCTGACCCTGGACGTGTACGAGTCTCACCGCGCTGCCCTCTTGGCTAAGAAGAAAACCAactccctgaccctgacccctgGAGCTACCCAGCCTTTTTATGTTACAGCCCTGCCTGACGACAAggTTCCTAAAGGAACATGTCCAGGATGCTATCTGACCGGCTCCCTGGTCGTGCCTAAGGGAGAATACGGCAAGAAAGCAGGACAGGCCTCTGCAAAACGACAAGGAAAATGTAAAAAGGACATTGTGCCAGTGGTCTATCACCTCATCCCTGCACCCAACAAGACCAAGAATGGAGCGAAGGAGGGAGCGAAGGAGGGggtgaaggagaaagagggagcgaaGGAGGGggtgaaggagaaagagggagcgaaGGAGGGGgcgaaggagaaagagggagcgaaGGAGGATGCGAAGGAGGGAGCGAAGGAGAAGGATGTGAAGGAGGAGTTTGAAGAGGCTCTCAGAGACCTGAAGATACAGTGGATGACcaagttaGACACCAGCTCCCTGTATGATGACCTGAAGGAGAACTTCTCTTCTTACCTGCCACTACATGTTCAGAGGCTGCACCAGCTCGACTCTGAGAAGgagCGTCTGAAGCGCCTGGGTGACATCGTAACGGCCTCTGACATGGTTCTGTCTCAGATCGACCAGACGGCCCTGGCAGTTTACCTCACCTTAAAGACCGACCCTCGCCCTGACGCTGCCACAATCAAGAGTGACATGGAGAAGCAGAAATGTTCCCTGCTGGATGCTCTGTGTAGGAAGGGCTGTGCCCTGGCTGACCTGGTACTGCTGCCTGCTCCACCCCAGGACTGGGCTGGGGGGGCCGGGGGGGCCGGAGACGGGGCAGAGacaggggctgaagaggaggaggtgaccaGCTCTGACGACGCCCAACAGGGCAGGGCCAAAGCCTTGACAGACACCTTCTGGGAGTTGCAGAAGTGGGTGGAGCTAACGGACTCTAAGGTGTTGACGTTCTCCTACAAACATGCACTAGTCAATAAGATGTACGGCAGAGCCCTGAAGTTTGCCTCCAAGATCGTAGAAGATAAACCCAGTAGAGAGAACTTGAAGAACTGCATTCAGGTAATGCGGTCCTTGGGCTGGATGCACTGTGCCACTTTCACAGAGAACTGGCTGCCCATCATGTACCCTGCCGACTACACTCCCTTCTAGACactctgttacacacacacacacacacacacacacacacacacagcaggcatGGATTGACCTCACAAACATAAACGCACATCTGAAAACAGTCAGCGATTTTATTTTTACCAAGTCTTGACTGAATGCCTCAAAACAATGTGGTCGCGTAGAGAAGATTTCAACCCAGACACATTTTCAGAGCTTCTTGTTAAAAACCCTTGGATCGTTTCATCTTTATCTGATATTTCTGTTCTGAATGTTTCACCCTCCTGAAGGAACCCGGTCTGTAGAAAGGTACCGACACGCGTCATAATACACATTATAAACAGGCAATATGACATGTTATTATTCTCCCTGATGgatgtttaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgtcctctCTTTGGAATCCCTGGAAAGAGCCTCCCTCGTTGTCAGGATTCCACAGTGATCCTGTCCTCGCTTTTgtttcacccctccctccctccttccctccccctttctctgtaCTGTAAATTAAGCATTTGAGGTTTTAGTTACGGTCTGAAGTTCAGGGTTcatctgtctcattctgtcttctCGTTGCCAACGACAGTCTCTCCTAATGGCCTTAACTTAATCCACCACGGGACCGTCAGCGCCGTCCAACTCTGACTCCAGATCGATCAGAACAACCTCCTCATATCTCTCTGGTTGTGGCCCAAacaccaccctattccctatatagtgcacttcttgtGACTAGAGCCCTGCGGGGGTTTCATACGGCTGTGATTTGAAAgcagtgcactctatagggaataggttaaCATTTGGGAGGCATCCTATCGGTTCTCTCTGCTGGTGTCAAAAGACCTTTCGGATAATATTAATGGGATGTCTTGTATTTATATTACAACTCAAAACCTTAGTCAATTAAACAACAATATTTTACGGAATGTTAAGATTTTAAGGAAATGTACTTTTTAGTATTATTTTATAACCATATTCTTCCTGGACGACATGTGGAAAGTACCAACACGCAGTTTTGTTATCACTGTAATGGAATTATGTCACAAATGAATAAAAAGATTTGGAAGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679164 lncRNA upstream 1149 978239 ~ 978444 (+) True G2339962
TU2679161 lncRNA upstream 8158 971202 ~ 971435 (+) True G2339960
TU2679159 lncRNA upstream 24747 954560 ~ 954846 (+) True G2339958
TU2679136 lncRNA upstream 32681 945293 ~ 946912 (+) False LOC118947137
TU2679137 lncRNA upstream 32681 945293 ~ 946912 (+) False LOC118947137
TU2679400 lncRNA downstream 15067 1061365 ~ 1061690 (+) True G2340101
TU2679406 lncRNA downstream 21630 1067928 ~ 1092799 (+) False G2340105
TU2679407 lncRNA downstream 21630 1067928 ~ 1092799 (+) False G2340105
TU2679411 lncRNA downstream 45746 1092044 ~ 1092799 (+) True G2340105
TU2679423 lncRNA downstream 53739 1100037 ~ 1100972 (+) True G2340113
XR_005041788.1 mRNA upstream 33580 945452 ~ 946013 (+) False LOC118947137
XM_036972372.1 mRNA upstream 161752 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 161752 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 162472 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 162472 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972382.1 mRNA downstream 155739 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 155769 1202067 ~ 1208674 (+) False blzf1
XM_036972381.1 mRNA downstream 155769 1202067 ~ 1208674 (+) False blzf1
XM_036972383.1 mRNA downstream 155769 1202067 ~ 1208674 (+) False blzf1
XM_036972385.1 mRNA downstream 155862 1202160 ~ 1208674 (+) False blzf1
TU2679153 other upstream 6810 972479 ~ 972783 (+) True G2339955
TU2679051 other upstream 105754 871107 ~ 873839 (+) False G2339912
TU2679060 other upstream 105754 871107 ~ 873839 (+) False G2339912
TU2679067 other upstream 105754 871107 ~ 873839 (+) False G2339912
TU2679071 other upstream 105754 871107 ~ 873839 (+) False G2339912
TU2679430 other downstream 70645 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 70645 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 160960 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 233597 1279895 ~ 1301250 (+) True pibf1

Expression Profile