RNA id: XM_036972385.1


Basic Information

Item Value
RNA id XM_036972385.1
length 2403
RNA type mRNA
GC content 0.54
exon number 8
gene id blzf1
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1202037 ~ 1209051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGGTCGGTGAGAACACAAACAAGATGGCGACCAAGATTTAACAGAGGAAATATTTTTAATCGGGTAAATAACAGTATGTGCATGTTTATTCTGATACCGTTTTGATATCTCTCTACTTTACACTGCTAATGTTAGTTAACAATGTTTACACCTTTATGTCCAGGGCATGGTTTGTTGTTTCCTACTCGGTTTGCTTTGTTGTTAGTTGAGGAAAGCTGAACTCCGTTCTCTTATATCCTTATCTAACCGGCTGGGTGTTGATCATGTGCTGACACTGCTGTTAAAGCTCCTCCACAGATAACAGGGTGGTAAACTCAGAATCaacatttgtctgtctgtcttcggGAGAGAGATCTAAACTGCCATCCTGGAAGTCATCCACCGCCCTGTCCCTCTGCCATTCGACTGGACTGTTGTGAAGACTTCCTCTACCATCATGTCTACCGCTGCAGTAGCAGACAGAGGTTCCGTCCGTCCAGTCAGGGGCCCCGGCGACGGCATGGAGACAGACAAGCCCCCAGTCGCTAAGGAGATCGGTGCCGTGGATACGCCTCTGTCTTCGGTGCCACTACTTAAGGTAGCTAGTCCCAAACAAAGCCCCAAGAAGATGCACCCTGCCCCCGCCAGCCTCCAGCACAGCCCCCACTCCACCCCCCAGCAGAGCCCCAGAGCCAGTCCCAGAGCCACCCCGTCTGCCCCCCAGCCCCCCGGGGTGCTTCACCTGGGGAAGGTTCCCCGGGAGGCCTGCATGGTGGTGGAGGCGGTGAGGATCGTTGTTCCCCGTGCCGCCATCAGCCGGAGTGGGGGTCATGTGGGTCCGgctgaggagaaaggagaggccTGGGCTGGGCAGCAGATGGAGGAGcggcccccctctccctcccctcctctggaGGACCTGAGAGGAGCCATGGAGAAGCTgcagaactcagagagaagactGCTGCAGGACAAGGAGGGGCTCCTCAACCAGCTCCACGTGCAGACTGAGGTGAACAGAGAGTTGAAGAAGCTGCTGGTAGCCTCTGTAGGTGATGACCTGCAGTACCATTTTGAGCGTCTGGCCAGAGAGAAGAACCAGCTGATCTTAGAGAACGAGGCTTTGGGTCGCAGCCGGGCCTCCACAGCAGAACAGCTGGAACGCATGTCTATACAATGTGATGTCTGGAGGAGCAAGTTCCTGGCGTCCAGAGTGATGGCGGAGGAGCTGACCAATGCCAGGGTTTCTCTCCAGCACCAGACCAGAGAGGCTCAGAGCGCCATCACAGACCTGCTGAGTGAGAGAGACGAGTTCTTCAGAGACATGATGCTAACCCACAggTCTCTGGAGCAGCTGCTGGTCTCTCTCCAGTGGGGTCGACAGCAGACCTACTACCCCAGTGGCCAGCCACTCAGCACGGGAGAACTAGCCCTAGCCAATCACAAGCTGGCGGACGCCATCAACTCCCGCCTGCTGGGGAAGGTTGGGCCAGTAGGGAGCAGCAGTGGAGCCGGGCTGGGAAAAGGAAGACGGGTCTCAGAGCTCCCTAACACCTCACACACGCCTGCTGAGAAGATGGCTGAGAAGGTGTTGAAGATCCTGGACCCTATTTCCTGTTCAGACAACGAGGAAGagccctcccccctctctatctctgacaCCTCCCCCTCGGCCTTCCTGACCAATAAGAAGAGCATCGGCCGGTTCCACCCTTACACCCGCTATGAGAACATCACCTTCAACTGCTGCGAGCGCTGCAGCGGAGACATCCTGGTCCTCTAGGGGTCAGAGGGCAGGGGTCGTGACCTTTAACCTGGACAGGTCAGCGCTGGCCGCTGTGAGGAACACCAGTCGGCTCTCCCTCCGTCGAACCGTCTGGTTTCACAGCGGCCTCAGAGCGGGACTTGACTGGAAGCACGGCAGAAGCTGACGAAACAACCGCTGATTTTAATTGGCTGATCTCTGTCCGTCACCGTCTCATAACTCTTAGAACCTCCCACGATATTGTGGGCTTCAGAACGTGAGCAGAGCAAGTGATTTAAACAAGGAAGTGAGTTCGGAGAATCTGAAAGTATTCCATCTTGGAATCAATTGGGCTTCCCAAAAATAATATGGTCAAAATTATACAACACGTGTCAgtcagttaactgccttgttcaggggcagaacggcagattttttaccttgtcagctcggggattcgatccagcaaccgtTCGGTTACTGTATCGAGTATTCAACCCCTCTCGTTATggcttaaataagttcaggagtgagaatgtgcttaacaagtcacattagttgcatggactctcgctgtgtgcaataatagtgtttaacatgattttctaATGACTTCCTCATCTCAGTATTATCGGaaggttcctcagtcgagcagtgaatttcaaacacagattcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679535 lncRNA upstream 3025 1198494 ~ 1199135 (+) True G2340165
TU2679531 lncRNA upstream 29253 1172453 ~ 1172907 (+) True G2340162
TU2679524 lncRNA upstream 42303 1159106 ~ 1159857 (+) False G2340157
TU2679525 lncRNA upstream 42812 1159106 ~ 1159348 (+) True G2340157
TU2679466 lncRNA upstream 55145 1146688 ~ 1147015 (+) True G2340128
TU2679501 lncRNA downstream 623 1209297 ~ 1209995 (+) False G2340150
TU2679502 lncRNA downstream 623 1209297 ~ 1209962 (+) True G2340150
TU2679528 lncRNA downstream 1491 1210165 ~ 1210650 (+) True G2340160
TU2679549 lncRNA downstream 33800 1242474 ~ 1245824 (+) False G2340179
TU2679550 lncRNA downstream 33800 1242474 ~ 1249277 (+) False G2340179
XM_036972352.1 mRNA upstream 155862 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA upstream 155862 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA upstream 155862 979594 ~ 1046298 (+) True tpp2
XR_005041788.1 mRNA upstream 256147 945452 ~ 946013 (+) False LOC118947137
XM_036972371.1 mRNA upstream 385039 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972351.1 mRNA downstream 7403 1216077 ~ 1299330 (+) False pibf1
XM_036972350.1 mRNA downstream 7403 1216077 ~ 1299562 (+) False pibf1
XM_036972349.1 mRNA downstream 7405 1216079 ~ 1301282 (+) False pibf1
XM_036972375.1 mRNA downstream 97317 1305991 ~ 1333394 (+) True klf5a
XR_005041786.1 mRNA downstream 145253 1353927 ~ 1354415 (+) False LOC118947132
TU2679430 other upstream 83191 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 83191 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 229377 972479 ~ 972783 (+) True G2339955
TU2679067 other upstream 328321 871107 ~ 873839 (+) False G2339912
TU2679504 other downstream 71221 1279895 ~ 1301250 (+) True pibf1

Expression Profile