RNA id: TU2679512


Basic Information

Item Value
RNA id TU2679512
length 1622
RNA type TUCP
GC content 0.49
exon number 2
gene id blzf1
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1202037 ~ 1209051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCGGACTTCtatacaacacacagacatgatgCTAACCCACAGGTACAGTAGGACTTCTATACAACACACTAGTGGTAAAACTCACATAGGAACATAAAGTAACTGAGAGACCCACCACAGTACCGGCTATACAgatgatgtgtttgtgtgtctctctcccaggTCTCTGGAGCAGCTGCTGGTCTCTCTCCAGTGGGGTCGACAGCAGACCTACTACCCCAGTGGCCAGCCACTCAGCACGGGAGAACTAGCCCTAGCCAATCACAAGCTGGCGGACGCCATCAACTCCCGCCTGCTGGGGAAGGTTGGGCCAGTAGGGAGCAGCAGTGGAGCCGGGCTGGGAAAAGGAAGACGGGTCTCAGAGCTCCCTAACACCTCACACACGCCTGCTGAGAAGATGGCTGAGAAGGTGTTGAAGATCCTGGACCCTATTTCCTGTTCAGACAACGAGGAAGagccctcccccctctctatctctgacaCCTCCCCCTCGGCCTTCCTGACCAATAAGAAGAGCATCGGCCGGTTCCACCCTTACACCCGCTATGAGAACATCACCTTCAACTGCTGCGAGCGCTGCAGCGGAGACATCCTGGTCCTCTAGGGGTCAGAGGGCAGGGGTCGTGACCTTTAACCTGGACAGGTCAGCGCTGGCCGCTGTGAGGAACACCAGTCGGCTCTCCCTCCGTCGAACCGTCTGGTTTCACAGCGGCCTCAGAGCGGGACTTGACTGGAAGCACGGCAGAAGCTGACGAAACAACCGCTGATTTTAATTGGCTGATCTCTGTCCGTCACCGTCTCATAACTCTTAGAACCTCCCACGATATTGTGGGCTTCAGAACGTGAGCAGAGCAAGTGATTTAAACAAGGAAGTGAGTTCGGAGAATCTGAAAGTATTCCATCTTGGAATCAATTGGGCTTCCCAAAAATAATATGGTCAAAATTATACAACACGTGTCAgtcagttaactgccttgttcaggggcagaacggcagattttttaccttgtcagctcggggattcgatccagcaaccgtTCGGTTACTGTATCGAGTATTCAACCCCTCTCGTTATggcttaaataagttcaggagtgagaatgtgcttaacaagtcacattagttgcatggactctcgctgtgtgcaataatagtgtttaacatgattttctaATGACTTCCTCATCTCAGTATTATCGGaaggttcctcagtcgagcagtgaatttcaaacacagattcaaccacaaagacaagggaggttttccaatgtctcgcaaagaaggtcatctattggtagatgtgtGAAAATTGGAATATCccgttgagcatggtgaagttattcattacactttggatggtggatcaatacacccagtcactacagagatacaggcgtccttcctaactcagttgccggagaggaaggaaaccgttcagggatttcaccacgaggccaatggtgactttaaaacagttacagagtttaatggctgtgaaaggagacaactgtggatggatcaacaacattgtagtcactccacaatactaacctaaatgacagagtgaaaagaaggaagcctgtacagaataacaaatattccaacacatgcttcctgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679541 lncRNA upstream 2193 1204133 ~ 1205065 (+) True G2340171
TU2679535 lncRNA upstream 8123 1198494 ~ 1199135 (+) True G2340165
TU2679531 lncRNA upstream 34351 1172453 ~ 1172907 (+) True G2340162
TU2679524 lncRNA upstream 47401 1159106 ~ 1159857 (+) False G2340157
TU2679525 lncRNA upstream 47910 1159106 ~ 1159348 (+) True G2340157
TU2679501 lncRNA downstream 246 1209297 ~ 1209995 (+) False G2340150
TU2679502 lncRNA downstream 246 1209297 ~ 1209962 (+) True G2340150
TU2679528 lncRNA downstream 1114 1210165 ~ 1210650 (+) True G2340160
TU2679549 lncRNA downstream 33423 1242474 ~ 1245824 (+) False G2340179
TU2679550 lncRNA downstream 33423 1242474 ~ 1249277 (+) False G2340179
XM_036972352.1 mRNA upstream 160960 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA upstream 160960 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA upstream 160960 979594 ~ 1046298 (+) True tpp2
XR_005041788.1 mRNA upstream 261245 945452 ~ 946013 (+) False LOC118947137
XM_036972371.1 mRNA upstream 390137 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972351.1 mRNA downstream 7026 1216077 ~ 1299330 (+) False pibf1
XM_036972350.1 mRNA downstream 7026 1216077 ~ 1299562 (+) False pibf1
XM_036972349.1 mRNA downstream 7028 1216079 ~ 1301282 (+) False pibf1
XM_036972375.1 mRNA downstream 96940 1305991 ~ 1333394 (+) True klf5a
XR_005041786.1 mRNA downstream 144876 1353927 ~ 1354415 (+) False LOC118947132
TU2679430 other upstream 88289 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 88289 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 234475 972479 ~ 972783 (+) True G2339955
TU2679051 other upstream 333419 871107 ~ 873839 (+) False G2339912
TU2679504 other downstream 70844 1279895 ~ 1301250 (+) True pibf1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_05927821_05933216.mRNA True 3332 mRNA 0.40 6 CI01000299 5927314 ~ 5934832 (-)