RNA id: XM_036972351.1


Basic Information

Item Value
RNA id XM_036972351.1
length 2739
RNA type mRNA
GC content 0.51
exon number 16
gene id pibf1
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1216077 ~ 1301282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACGGAAGTGACTCGGATGTCACTTCCGTTTGTTTGTTGTGATCCGCTAGCGGCGGTTTCTATGCGATTCGAAGCGGGACCGTTGAAATTATGAAAACAGCGACCACCCAACATTTAGAGTTGTTCGCGAATATAAATAGGAAATGCTAAACCCCATTTAATTTATGGATATTACAACAAAAAACTGAATAATTTGTAAGgaattagccagctagctatgaAGCTACCTGTTGGACAGTGAACTTTTCCAACTATTCGACGTTAGCTAACTATAACTATGTAACTAACTAGTACTGTACAGTAGCTAACTGTTAATGCAACCACAGACAAGGAGCTCGTTACCAGTATATGTCGTGCAACAGTCGACGTTGTTAGCTAGTTAGTACAATCatgcaactagctagctaacgcctTAACTGTCCTTGAACTCTTGAGTTCGCTAATCCTTAATCTTCGGTAATACTTAAATTATATGCTCAGTAGTTAGCTGGCAAAAAGCAGATCACTACTTGTTTGACAAAAGCGAGGTGGCTAACGTTATCTAGGTACAAAATGCCTCCGAAGAAGCAGAAAAACCCGTCGGTGAATATCTCCAGCTCCCTAGAGGAGTCGGAAGAATTCAGTCTGGAGACCACGGTGCCTACGGAAGACATCTCGTCGTCGGACGAACGGGACCGCACCGGGACACAGAAAGTCACCCGACAGCTCCTCGAGAGGAAAGAGCTACTGCACAACTTACAGCTGTTAAAAATAGAGATGTCGCAGAAAAATCTCATCATAGATAACATGAAAGTGGACCACTTGACAAAGacggaggagctggaggagaggctGAATGTTGCCCTGCACCAGAAACAAGTTCTGGCTCTGAGACTGGACAGCCAGCTGCAACTCACCCAGGATGAGAGGAGGAAGCAGCAGGCTCTTAGGAAGCAGGAGATGGATGGGATCCTACTGAGACAGAAGCAGCTGGAGGAGACTAACAGACAGCTGTGTGACAAGGCAGGAGACCTGCGACGCAGCCTCAGGGACCTGGAGCTCACCGAGGACAAATACAAGGAGCTCCGAGATATCCCAGAGGAGAGACTCTCTATCACTGAATACGTAGCGGTGTATTTCTATGAGGTGGTGAGTCCTCTCAAAGcccagctctctgagctccatgTCAAGAGGAACAGCCTGACAGACGACCTGGAGACTCACAGGACTGAGATCAAGGCCCTTAtgaagAGTTACGAGGAGGAGCGCAGGGTGAGGTCAGAGCTGGAGATCAGGAACCAGAGACTAACTCTGGAGCTGGCTGACACTAAAGGGCTCATCCAGGAGGGAGACTTCAAGCGGGACAACTACTCTAACGTCAaacgTGAGCGGGATGCGTTTGAGTGTGAGGTGGGAGAGTTGAGGAAGAGGCTGGAGCTGCTGGAGATGACTCATGAGGTCCAGACCAGGGAGAGGAATGAGCTGAGTCGAGAGGTGTCTACTCTGCAGCAGACGGTGACCCTCCTCCAGAAGGATAAGGAATATGTTCACAGACAGAGCATGGAGCTGAATGTGCGCTGTGCCCACCAGGAAGACCGTCTAGAGAGGCTGCAGACCCAGCTGGACGGCGCCCAGAGGGCCAGGGAGGAGGTCTATCACAAATACATTGCTTCTAGAGACCACTACAAGACAGAGTACGAGAATAAACTTGCTGAGGAGCTGGAGAACATTCGTCTGAAGACCAGCCAGGAGATCGACAGCCTGCAGAGGACCTCAAAGGAGATgtacgagagagagaacagGAACCTCCGTGAGACGCGGGACAACGCAGTGCTGGAGAAGGACAGAGCGAcgacggcagagagagagacacaggccaGATACGACCAGCTACTAGAACAGTTCCGTGGTGTCCAGACGGGGACAGACAGCCGGGTGGCAGAGCTCCTGAACCAGGTGAAGCTGAAGAGCTTTGAGACAGAGCGCTCTCAGATGGTACAAGAGGAGACCGCCAGGAACCTGGGACAGTGtcagatggagacagagaaacaccagAAGAAGCTAGAGGTCATGACCAAGGAGTTGTACAGGCTTCAGGCGTCCTCAGAGAAGCAGATAACGGAACTCCAGGCCCAGAATGCTGAGCAGCAGGCCAGACTACAGACCTACGAGAAACTGGAGCAGGAGCTGGACGATGTCACCATGCAGGCTGCTGAAATTGATGATgagcaggaagcagagagagtTCTGTTCTCCTATGGTTACGGTGCCAACGTTCCCACAACCGCCAAGAGACGACTCAGGCAGAGTGTCCATCTGGCCCGTAGACTGTTGCAGCTGGAGAAACAGAACACACTGCTGAGGAGAGATCTGGAGAGACGCAACGCACACACAGGACAGATCTCTGAGGAGctgGAAGCAGCTAACCGTCTCCTACAGCAGGCCCAGCAGCCCTACAGTTACCTGATCGACacggtgagacagagagacacacagatactGTCCCTCAGAGAACGCATCACACAGCTGGAGGAGgacaccagATCTCTGAGGAAAGAGAAGACGTCTCTCCAACAGGTGAAGAACAATATGGCCTCCGACCTGGAGCGACTGCTCAACCACCGAGaggAGTTATCTGTGATGAAGCAGGTTCTGCTCAGTATGAGGTCCAGAAAGACTGACCACTCCCCCTTCTGTCCTCTCTAGGAGTTATCTGTGATGAAGCAGGTTCTGCTCAGTATGAGGTCCAGAAAGACtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679528 lncRNA upstream 5427 1210165 ~ 1210650 (+) True G2340160
TU2679501 lncRNA upstream 6082 1209297 ~ 1209995 (+) False G2340150
TU2679502 lncRNA upstream 6115 1209297 ~ 1209962 (+) True G2340150
TU2679541 lncRNA upstream 11012 1204133 ~ 1205065 (+) True G2340171
TU2679535 lncRNA upstream 16942 1198494 ~ 1199135 (+) True G2340165
TU2679600 lncRNA downstream 2870 1302200 ~ 1302756 (+) True G2340202
TU2679601 lncRNA downstream 4053 1303383 ~ 1303812 (+) False G2340203
TU2679602 lncRNA downstream 4053 1303383 ~ 1303812 (+) True G2340203
TU2679610 lncRNA downstream 25839 1325169 ~ 1326862 (+) True G2340209
TU2679515 lncRNA downstream 37571 1336901 ~ 1338030 (+) False G2340154
XM_036972382.1 mRNA upstream 7403 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA upstream 7403 1202067 ~ 1208674 (+) False blzf1
XM_036972381.1 mRNA upstream 7403 1202067 ~ 1208674 (+) False blzf1
XM_036972383.1 mRNA upstream 7403 1202067 ~ 1208674 (+) False blzf1
XM_036972385.1 mRNA upstream 7403 1202160 ~ 1208674 (+) False blzf1
XM_036972375.1 mRNA downstream 6661 1305991 ~ 1333394 (+) True klf5a
XR_005041786.1 mRNA downstream 54597 1353927 ~ 1354415 (+) False LOC118947132
XM_036972359.1 mRNA downstream 80938 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 80938 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 80938 1380268 ~ 1427870 (+) False lmo7b
TU2679512 other upstream 7026 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 97108 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 97108 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 243294 972479 ~ 972783 (+) True G2339955
TU2679067 other upstream 342238 871107 ~ 873839 (+) False G2339912

Expression Profile