RNA id: XM_036972349.1


Basic Information

Item Value
RNA id XM_036972349.1
length 2987
RNA type mRNA
GC content 0.51
exon number 17
gene id pibf1
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1216077 ~ 1301282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGAAGTGACTCGGATGTCACTTCCGTTTGTTTGTTGTGATCCGCTAGCGGCGGTTTCTATGCGATTCGAAGCGGGACCGTTGAAATTATGAAAACAGCGACCACCCAACATTTAGAGTTGTTCGCGAATATAAATAGGAAATGCTAAACCCCATTTAATTTATGGATATTACAACAAAAAACTGAATAATTTGTAAGgaattagccagctagctatgaAGCTACCTGTTGGACAGTGAACTTTTCCAACTATTCGACGTTAGCTAACTATAACTATGTAACTAACTAGTACTGTACAGTAGCTAACTGTTAATGCAACCACAGACAAGGAGCTCGTTACCAGTATATGTCGTGCAACAGTCGACGTTGTTAGCTAGTTAGTACAATCatgcaactagctagctaacgcctTAACTGTCCTTGAACTCTTGAGTTCGCTAATCCTTAATCTTCGGTAATACTTAAATTATATGCTCAGTAGTTAGCTGGCAAAAAGCAGATCACTACTTGTTTGACAAAAGCGAGGTGGCTAACGTTATCTAGGTACAAAATGCCTCCGAAGAAGCAGAAAAACCCGTCGGTGAATATCTCCAGCTCCCTAGAGGAGTCGGAAGAATTCAGTCTGGAGACCACGGTGCCTACGGAAGACATCTCGTCGTCGGACGAACGGGACCGCACCGGGACACAGAAAGTCACCCGACAGCTCCTCGAGAGGAAAGAGCTACTGCACAACTTACAGCTGTTAAAAATAGAGATGTCGCAGAAAAATCTCATCATAGATAACATGAAAGTGGACCACTTGACAAAGacggaggagctggaggagaggctGAATGTTGCCCTGCACCAGAAACAAGTTCTGGCTCTGAGACTGGACAGCCAGCTGCAACTCACCCAGGATGAGAGGAGGAAGCAGCAGGCTCTTAGGAAGCAGGAGATGGATGGGATCCTACTGAGACAGAAGCAGCTGGAGGAGACTAACAGACAGCTGTGTGACAAGGCAGGAGACCTGCGACGCAGCCTCAGGGACCTGGAGCTCACCGAGGACAAATACAAGGAGCTCCGAGATATCCCAGAGGAGAGACTCTCTATCACTGAATACGTAGCGGTGTATTTCTATGAGGTGGTGAGTCCTCTCAAAGcccagctctctgagctccatgTCAAGAGGAACAGCCTGACAGACGACCTGGAGACTCACAGGACTGAGATCAAGGCCCTTAtgaagAGTTACGAGGAGGAGCGCAGGGTGAGGTCAGAGCTGGAGATCAGGAACCAGAGACTAACTCTGGAGCTGGCTGACACTAAAGGGCTCATCCAGGAGGGAGACTTCAAGCGGGACAACTACTCTAACGTCAaacgTGAGCGGGATGCGTTTGAGTGTGAGGTGGGAGAGTTGAGGAAGAGGCTGGAGCTGCTGGAGATGACTCATGAGGTCCAGACCAGGGAGAGGAATGAGCTGAGTCGAGAGGTGTCTACTCTGCAGCAGACGGTGACCCTCCTCCAGAAGGATAAGGAATATGTTCACAGACAGAGCATGGAGCTGAATGTGCGCTGTGCCCACCAGGAAGACCGTCTAGAGAGGCTGCAGACCCAGCTGGACGGCGCCCAGAGGGCCAGGGAGGAGGTCTATCACAAATACATTGCTTCTAGAGACCACTACAAGACAGAGTACGAGAATAAACTTGCTGAGGAGCTGGAGAACATTCGTCTGAAGACCAGCCAGGAGATCGACAGCCTGCAGAGGACCTCAAAGGAGATgtacgagagagagaacagGAACCTCCGTGAGACGCGGGACAACGCAGTGCTGGAGAAGGACAGAGCGAcgacggcagagagagagacacaggccaGATACGACCAGCTACTAGAACAGTTCCGTGGTGTCCAGACGGGGACAGACAGCCGGGTGGCAGAGCTCCTGAACCAGGTGAAGCTGAAGAGCTTTGAGACAGAGCGCTCTCAGATGGTACAAGAGGAGACCGCCAGGAACCTGGGACAGTGtcagatggagacagagaaacaccagAAGAAGCTAGAGGTCATGACCAAGGAGTTGTACAGGCTTCAGGCGTCCTCAGAGAAGCAGATAACGGAACTCCAGGCCCAGAATGCTGAGCAGCAGGCCAGACTACAGACCTACGAGAAACTGGAGCAGGAGCTGGACGATGTCACCATGCAGGCTGCTGAAATTGATGATgagcaggaagcagagagagtTCTGTTCTCCTATGGTTACGGTGCCAACGTTCCCACAACCGCCAAGAGACGACTCAGGCAGAGTGTCCATCTGGCCCGTAGACTGTTGCAGCTGGAGAAACAGAACACACTGCTGAGGAGAGATCTGGAGAGACGCAACGCACACACAGGACAGATCTCTGAGGAGctgGAAGCAGCTAACCGTCTCCTACAGCAGGCCCAGCAGCCCTACAGTTACCTGATCGACacggtgagacagagagacacacagatactGTCCCTCAGAGAACGCATCACACAGCTGGAGGAGgacaccagATCTCTGAGGAAAGAGAAGACGTCTCTCCAACAGGTGAAGAACAATATGGCCTCCGACCTGGAGCGACTGCTCAACCACCGAGaggAGTTATCTGTGATGAAGCAGGTTCTGCTCAGTATGAGGTCCAGAAAGACTGAGCCCTTCCTGGATCCTGACGGGGCTGGGACGGAGCTGGCCTTCAGCAGACCCAAAAACCTCAGCAGGACCACAGAGGAGGATGAGCAGAACCCTCACAGACACAGACCCAAACCCACCGTGTTCaccAATAAGGAAGCTCCTGGATGGTACAGGAAAGTCAAGTTCCCACCTGAATGACCAATGGCCTTACAGGTGGTGCAGATGGGATTAGTGTGGACACTCCGTACTGGTTTTATTGACTGTATTGGTAATAGTTTATATGTGTATGTTGTGCTGTACTGTTGTAATCGGTTGGCTTGCTATGTTTTATATAAAAATCTTTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679528 lncRNA upstream 5429 1210165 ~ 1210650 (+) True G2340160
TU2679501 lncRNA upstream 6084 1209297 ~ 1209995 (+) False G2340150
TU2679502 lncRNA upstream 6117 1209297 ~ 1209962 (+) True G2340150
TU2679541 lncRNA upstream 11014 1204133 ~ 1205065 (+) True G2340171
TU2679535 lncRNA upstream 16944 1198494 ~ 1199135 (+) True G2340165
TU2679600 lncRNA downstream 918 1302200 ~ 1302756 (+) True G2340202
TU2679601 lncRNA downstream 2101 1303383 ~ 1303812 (+) False G2340203
TU2679602 lncRNA downstream 2101 1303383 ~ 1303812 (+) True G2340203
TU2679610 lncRNA downstream 23887 1325169 ~ 1326862 (+) True G2340209
TU2679515 lncRNA downstream 35619 1336901 ~ 1338030 (+) False G2340154
XM_036972380.1 mRNA upstream 7405 1202067 ~ 1208674 (+) False blzf1
XM_036972375.1 mRNA downstream 4709 1305991 ~ 1333394 (+) True klf5a
XR_005041786.1 mRNA downstream 52645 1353927 ~ 1354415 (+) False LOC118947132
XM_036972359.1 mRNA downstream 78986 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 78986 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 78986 1380268 ~ 1427870 (+) False lmo7b
TU2679512 other upstream 7028 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 97110 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 97110 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 243296 972479 ~ 972783 (+) True G2339955
TU2679071 other upstream 342240 871107 ~ 873839 (+) False G2339912

Expression Profile