RNA id: XR_005041786.1


Basic Information

Item Value
RNA id XR_005041786.1
length 449
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC118947132
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1353782 ~ 1354415 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggtgccatagggctcaggtcagaaGTAATGAAccatacagggaacagggtgccatagggctcaggtcagaaGTAGTGAAccatacagggaacagggtgccatagggctcaggtcagaaGTAGTGAACCATACAGGGAACAGGGAgccatagggctcaggtcagaaGTAGTGAACCATACAGGGAACAGGGAGCCACAGGGCTCAGGTCAGAAGTAGTGAAccatacagggaacagggtgccatagggctcaggtcagaaGTAATGAACCATACAGGGAACAGGGAgccatagggctcaggtcagaaGTAATGAAccatacagggaacagggtgccatagggctcaggtcagaaGTAGTGAAccatacagggaacagggtgccatagggctcaggtcagaaGTAATGAACCATACAGGGAACAGGGAgccatagggctcaggtcagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679614 lncRNA upstream 14589 1339130 ~ 1339338 (+) True G2340213
TU2679516 lncRNA upstream 14962 1336901 ~ 1338965 (+) True G2340154
TU2679515 lncRNA upstream 15897 1336901 ~ 1338030 (+) False G2340154
TU2679610 lncRNA upstream 27065 1325169 ~ 1326862 (+) True G2340209
TU2679601 lncRNA upstream 50115 1303383 ~ 1303812 (+) False G2340203
TU2679626 lncRNA downstream 2737 1357152 ~ 1357588 (+) True G2340222
TU2679623 lncRNA downstream 6078 1360493 ~ 1361588 (+) True G2340219
XM_036972375.1 mRNA upstream 20533 1305991 ~ 1333394 (+) True klf5a
XM_036972349.1 mRNA upstream 52645 1216079 ~ 1301282 (+) False pibf1
XM_036972350.1 mRNA upstream 54365 1216077 ~ 1299562 (+) False pibf1
XM_036972351.1 mRNA upstream 54597 1216077 ~ 1299330 (+) False pibf1
XM_036972385.1 mRNA upstream 145253 1202160 ~ 1208674 (+) False blzf1
XM_036972359.1 mRNA downstream 25853 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 25853 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 25853 1380268 ~ 1427870 (+) False lmo7b
XM_036972360.1 mRNA downstream 25853 1380268 ~ 1427883 (+) False lmo7b
XM_036972365.1 mRNA downstream 25853 1380268 ~ 1427883 (+) False lmo7b
TU2679504 other upstream 52677 1279895 ~ 1301250 (+) True pibf1
TU2679512 other upstream 144876 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 234958 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 234958 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 381144 972479 ~ 972783 (+) True G2339955

Expression Profile