RNA id: TU2679625


Basic Information

Item Value
RNA id TU2679625
length 234
lncRNA type sense_over
GC content 0.52
exon number 2
gene id LOC118947132
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1353782 ~ 1354415 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACAGGAaacagggtgccatagggctcaggtcagaaGTAGTGAAccatacagggaacagggtgccatagggctcaggtcagaaGTAGTGAACCATACAGGGAACAGGGAgccatagggctcaggtcagaaGTAATGAACCATACAGGGTggcatagggctcaggtcagaaGTAGTGAACCATACAGGGAACAGGGAGCCACAGGGCTCAGGTCAGAAGTAGTGAAccatacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679614 lncRNA upstream 14444 1339130 ~ 1339338 (+) True G2340213
TU2679516 lncRNA upstream 14817 1336901 ~ 1338965 (+) True G2340154
TU2679515 lncRNA upstream 15752 1336901 ~ 1338030 (+) False G2340154
TU2679610 lncRNA upstream 26920 1325169 ~ 1326862 (+) True G2340209
TU2679601 lncRNA upstream 49970 1303383 ~ 1303812 (+) False G2340203
TU2679626 lncRNA downstream 2956 1357152 ~ 1357588 (+) True G2340222
TU2679623 lncRNA downstream 6297 1360493 ~ 1361588 (+) True G2340219
XM_036972375.1 mRNA upstream 20388 1305991 ~ 1333394 (+) True klf5a
XM_036972349.1 mRNA upstream 52500 1216079 ~ 1301282 (+) False pibf1
XM_036972350.1 mRNA upstream 54220 1216077 ~ 1299562 (+) False pibf1
XM_036972351.1 mRNA upstream 54452 1216077 ~ 1299330 (+) False pibf1
XM_036972384.1 mRNA upstream 145108 1202171 ~ 1208674 (+) False blzf1
XM_036972359.1 mRNA downstream 26072 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 26072 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 26072 1380268 ~ 1427870 (+) False lmo7b
XM_036972360.1 mRNA downstream 26072 1380268 ~ 1427883 (+) False lmo7b
XM_036972365.1 mRNA downstream 26072 1380268 ~ 1427883 (+) False lmo7b
TU2679504 other upstream 52532 1279895 ~ 1301250 (+) True pibf1
TU2679512 other upstream 144731 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 234813 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 234813 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 380999 972479 ~ 972783 (+) True G2339955

Expression Profile