RNA id: XM_036972360.1


Basic Information

Item Value
RNA id XM_036972360.1
length 4877
RNA type mRNA
GC content 0.55
exon number 27
gene id lmo7b
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1380268 ~ 1427883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAAACATCAGGAAACGCCCACTTTAGTTTATCGCACGTGTCAATAATGTTTGGTATCAAGTGAGCCCTTGGGAGGCGCGCGGAAGTCAATTAACGGGAATCGTTCTCCGGTGAGCAGAGTTTAGACTTTCAAGTATCGCAGCTGAAGTTTGACGCAGAATACAAGTCCCTTGTCTGTTTGAGGCCTGTGTGGTAAGATGGAGTGGCGAGAACAGACCAGTGTGACCTGTGAAGACGCCTTCACTGAGGCTCAACGGTGGATGGAGGAAGTGACAAATAAATCATTCGGAAGCAACAACTTCCGCTCTGCTCTGGAGAATGGAGTCCTGCTCTGCCAtcTAATCAACCAGTTGAAACCAGGCCTTATTAAGAGAATGAACACGCTGTCTACTCCAATGGCTGGACTGGACAATGTGAATGTGTTTCTGAGAGCGTGTGGTACACTCGGTCTACACGAGGCTCAGCTGTTTCATCCTGGAGACCTGCAAGACCTGTCCACACGCGCTACACTCAGGTGTGTAGAGAGCAAAAGGAGGCTGAAAAACGTTCTAATCACCATCTACTGGCTGGGTCGGAAGGCCCAGGCGGATCCCTTCTACTCTGGCCCTCAGCTCAACCTCAAAGCGTTCGAGGGACTACTGGGCATCGCTCTGTCCAAGGCTCTAGAAGAAACCCCCAGAGGCAGTGTAACAGACAGGGACTACAGTGACGTGATCTACCCAGAGAGGGATGATGAGCTGCCTCTAACCCGGTCCCAGACACCCGGCTACAGCAGAGAGGACTCCGTAGAGAGCTTTAACTCGGCCCTGAGCTTTGACTCGGCGGAGTCACGTACCCTCAGCTGTATCTCTGACTCCATCCTGAGGGCCGGCAGCGAGGactCCAGCAGTGACGTGGAGGCAGAGAACTCTTTTAGGATGAAGGCGGCGGAGGGCAGAGAATCGGGACTGAGGAACTGGGGCAACGTACCTGCACCCTTCCAGAGGAAGAAACGTGAGGAAAACCGAATTAAGGGCTGCCTCCCGAGCCCCCTCACCAGGAGCAAATCGTTGAATGACATCAGGCGGTTCCCGTCGCCCACGCAAGTGGTGCGCCAGGTTTCTGAGGGTGGCATGGAGCTGAGCCCCAGCGCCGTGAGCCAAGACCAGCTGCAGATGGTCAGAGCCCGGGTCCATGAGAGTGAGGCCAAGTGGCACAATGACCTGACCAAGTGGAAGCTCCGGCGGCACAGGTCTAACTGTGACCTGCGGAGGAAGATGCAGGAGAGGGACAACATCGTCCTGATGGCCAACGCAGGGGTCGGTACAGTCGGGACATTCAATAGTCTGCAGGAGGACAGggaagaggatgaggagtccCTATGCAGCAATGGCCACAAGGTCTCTCCGTCCACCTCGTTCATGGAGGGTTCCCTGGTGCTCCGACCCCACACCAGAGCCCCCACCTCGGTAAGTGAGGGTTCCCTGGAGCTCCGACCCCACACCAGAGCTCCGCTGGCCCTCAGCTCCTCCGTGGAGTCACCCTACAGCCCCGGAGCGTCGGAACCCTTCACCGCCCCCAGTGTGACCCTCCAGGGACCCGGAGCCGTGCCCCAATCAGAGCCCCTCGTCCTAGAGGGGAGGCGTCACACACCGGTGGAGCCAGACGGAGCTGGAGGATTAGCCACTTTCCCCAactctgcctctcccatctcctcccagACCATCTCTAGCCCAGCTCTCTTCATCTCCACTGGACGAGACCACAACGTCTCCTTGCTCTCAAATGGGATCCCGACGACCCTCCCTGGATCTAGCTCCAGTCTTACTACTGGTACCAgttcttctctaactacctctgACCCGGTGAACGGTACCGGCTCTAACCTAACCAGCGGTACCGGCTCTAACCTAACCAGCGGTACCGGCTCCCACAACCCCTCTGCCTCCATGGACATCCCAGACCAAGccctcctctctactgtagagTCCCTGACCTCGGTGGGAGCCCCGGGTCATGTCTCAGCTCCCCAGCAGCAGGAGCTTCCCCTCTACAGGTACAGTTCCAGGGCTccgggaggaagaggaagaggatctgcctctctccccagggGATACCGCCGGTCTGAGGGCTCTTTGTCCTGCCTCTCTGCCGGCTTCACCCCCCGACCGTTTGGAGCCAAGTCCTCCAGAGTGTCCTCGCTACCCAGGCTCTACAATTTGGAGAACTCTCTGCTGAATGAAAATGGAAACGGTTCCCTGCTCCCCACCAAGACTGCTCCCACCCGCCCCCAGAAAATGGTCACTATCTCGGAGGTCGCTGTCAGGGCTCAGCCCTGGGCCACAGCCAATCAGAGCAGTGTGAACCAGGAAGTAGAGGAGGGTGGGAGTCAGACCCAGCCCTCCATCCTGAAGACCAGAGGGGTTCCTGGACCTGCCACCCACCCCAAACCCTTACCCCCTTCTCTCCGGCCCAGCCTCCCTGTCTCAGTCAGACAGAATGGCTCTGCCCAGGTACGTCACAGTGACAGGGTGAGTCTTACCTTGAAGATTAACAGTCGACCACACTTTGGTTTCAACACTCACTGGGACTCGACAGGAGCAAGAGTCGGAGGCATCCAACCAGgtaGTCCTGCAGAGTTGTGCCAGCTCCGTGCAGGTGATGAGATAGTGTCTGTTGGTGGGCACAGGGTGGCAGAGATGAGCCACAGCCAGTGGAAGGGCATGATGACCTCTGCCCTGCAGAAAGGCAGTCTCACCATGGATGTACAGCGCTATGGTAACAACGGTCCAACTGACACCAGCAGAGATGCAACGATGATGAAACTGGCCCAGATCAACGGACAAGAGGTCAATGTGCTGACCTCTAAGAGCAGTAAGGGAGGTTTTCAGGACGATCCCCTGACTATCAGAAGTAAAGGAGGATCGGCGTCGGCGATATCTGATCTCCAGGTGCCGTCCCTCAGCACCTCCCCCTCCAGTTGGTCCTGGGACcccgaggaagagaggaggaggcaggagaaGTGGCAGGAGGAGCAGGAGCGCCTCCTACAGgAGAAGTACCGTCAGGACCAGGAGAGGCTGGATGCTGAGTGGCAACAGGCCCAGGAGGAGGCAGGGGCGGAGAGATACAGGCAGGCTGAGGTGACCCCTGATCCTCTACCGTCCAGATGCATCGTGGGATATGTAGTCCCTTGTGTCAAATCATCCACACCGAACATGGAGAGCTCAGGAGAGATGACCAATGGGATCGCTAGCCTTGCCAGTCCTCAGCCAGTCTTGAGCCAGCCCATGGCCCCTGTTGCCATTGGCTGTTGCCATGTGGAATCCAATCCAAAGGAAGTTGTTTTTGACGGGGGAAGAAGGGAGGAGCCTCGTCCTCAAGAAGGGAGGAACCTGGAAGAGGAGACTGATGAAGTGGCAGGAGGAGATAAGTGGTCTGGGGACTCCTATGGTTTCACCCAGCTATCTATAGCTGACAGGATGAAATCCAAGTCCTCCCCATCGTTGGAGGGTTTCCACAGACAGGAGGTGAAAGGCGCTACCAGGGAGGTCGCTAGGAGGAAGCCTCCTCAGAGCATGTCGTTAGTAGAGGCTGAGAGGCAACAGATCCTGGAcgagatgaggaagaggaccgCTCTGCTGACCGACAACAGCTGGATACGACAACGCTCCACCTCTGACAACAGACAACCAACCAACCGGCGAGGGCCTATGAGGAGGTACGACTCTCTGGACAACCTTCCCTCTTCCGCCACCCTGCTCTCTAACCCCCAACGCCCCCACTCCTCCCTGGGTTTCGCCGCCCCGTACCGCCCCCCCTCCTCCCGGCACAGCATGGGTGTGGCCCTGGGGGGTTACTCCAACGGGACCCAGAAGCACAGCCCTACCTGGCCCCGCCCCTTCAGCACATCTTCCCCCCCGCCCAACACCGGAGAGGAACCCGCCACCGGCGAATCACGACCCGTCTCACAGCAGCACCACCGagtgCTGACTTCTCGTcaggtgtgttcagtgtgtgtgtgtcctatggGCAGAGGGGCTGCCATGGTCATTGAGACCCTGAACCTCTGCTTCCACCTGGCCTGTTTTCAGtgtgtgGACTGCAGGTGCCGACTtggagggtcagaggtcagagccCAGATCAGAATCAGCAACGGGAAGCCTTACTGTGACCCCTGCTACATCCGACTCAAGTCACACCTTGCCACCTCCCTGTGACCAGAATGCATTGCAGCAGATTGAGGAAGAGACGACGACAACCTCAAACACGACGGTGGAGATCTTGACTATGACCTCGTGTTGACCATGTATTTAGAGCTGGTTGACCTTTCTTTTAGGGAACAATGTACCGATTTATACTATTGGCTGTGACTCAAATGgcttcctattccctacatagtgcactactacccatagggctctggtcaaaagtagtgcactatgtagggaatagggggccgttTGGGACATGTCTCAAAGATGCAGTTTTGGCGTTCTTCCTAGTTAAttaactactgtacatgttgaCATACCCTATGTCTCTGACGAAGATGCAGTTTTGGCGTTCTTCCTAGTTAATTAACTACTGTACATGTCCACATACCCTATGTCTCTGACTAAGAATCAGTTTTGGCGTTCTTCCTAGTTAATTAACTACTGTACATGTCTGACTAAGAATCAGTTTTGGCGTTCTTCCTAGTTAATTAACTACTGTACATGTCTGTAGCTTTTAATATGCAATCGATGGCTATCCACAACAATAGCTGGACACGTGTAGTTAAGAGCTATAGGGAGTTTTAAATCACAATTGGGATTTGTTTTTTTCTTGTTGATGACGTAAATTGATAAATGAGGCTCTATTAAATGAATCTAATAAATGTGAGTTGTATTTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679623 lncRNA upstream 18680 1360493 ~ 1361588 (+) True G2340219
TU2679626 lncRNA upstream 22680 1357152 ~ 1357588 (+) True G2340222
TU2679625 lncRNA upstream 26072 1353782 ~ 1354196 (+) True LOC118947132
TU2679614 lncRNA upstream 40930 1339130 ~ 1339338 (+) True G2340213
TU2679516 lncRNA upstream 41303 1336901 ~ 1338965 (+) True G2340154
XR_005041786.1 mRNA upstream 25853 1353927 ~ 1354415 (+) False LOC118947132
XM_036972375.1 mRNA upstream 46874 1305991 ~ 1333394 (+) True klf5a
XM_036972349.1 mRNA upstream 78986 1216079 ~ 1301282 (+) False pibf1
XM_036972350.1 mRNA upstream 80706 1216077 ~ 1299562 (+) False pibf1
XM_036972351.1 mRNA upstream 80938 1216077 ~ 1299330 (+) False pibf1
TU2679504 other upstream 79018 1279895 ~ 1301250 (+) True pibf1
TU2679512 other upstream 171217 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 261299 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 261299 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 407485 972479 ~ 972783 (+) True G2339955

Expression Profile