Fish Transcriptome and Expression Database

RNA id: XM_036972364.1

Basic Information

Item	Value
RNA id	XM_036972364.1
length	4794
RNA type	mRNA
GC content	0.56
exon number	28
gene id	lmo7b
representative	False

Chromosome Information

Item	Value
chromosome id	NW_023493665.1
NCBI id	JAAXML020000242.1
chromosome length	1484196
location	1380268 ~ 1427883 (+)
genome version	USDA_OmykA_1.1_2020_rainbow_trout_Genome
species	rainbow trout (Oncorhynchus mykiss)

Sequence

TCAAACATCAGGAAACGCCCACTTTAGTTTATCGCACGTGTCAATAATGTTTGGTATCAAGTGAGCCCTTGGGAGGCGCGCGGAAGTCAATTAACGGGAATCGTTCTCCGGTGAGCAGAGTTTAGACTTTCAAGTATCGCAGCTGAAGTTTGACGCAGAATACAAGTCCCTTGTCTGTTTGAGGCCTGTGTGGTAAGATGGAGTGGCGAGAACAGACCAGTGTGACCTGTGAAGACGCCTTCACTGAGGCTCAACGGTGGATGGAGGAAGTGACAAATAAATCATTCGGAAGCAACAACTTCCGCTCTGCTCTGGAGAATGGAGTCCTGCTCTGCCAtcTAATCAACCAGTTGAAACCAGGCCTTATTAAGAGAATGAACACGCTGTCTACTCCAATGGCTGGACTGGACAATGTGAATGTGTTTCTGAGAGCGTGTGGTACACTCGGTCTACACGAGGCTCAGCTGTTTCATCCTGGAGACCTGCAAGACCTGTCCACACGCGCTACACTCAGGTGTGTAGAGAGCAAAAGGAGGCTGAAAAACGTTCTAATCACCATCTACTGGCTGGGTCGGAAGGCCCAGGCGGATCCCTTCTACTCTGGCCCTCAGCTCAACCTCAAAGCGTTCGAGGGACTACTGGGCATCGCTCTGTCCAAGGCTCTAGAAGAAACCCCCAGAGGCAGTGTAACAGACAGGGACTACAGTGACGTGATCTACCCAGAGAGGGATGATGAGCTGCCTCTAACCCGGTCCCAGACACCCGGCTACAGCAGAGAGGACTCCGTAGAGAGCTTTAACTCGGCCCTGAGCTTTGACTCGGCGGAGTCACGTACCCTCAGCTGTATCTCTGACTCCATCCTGAGGGCCGGCAGCGAGGactCCAGCAGTGACGTGGAGGCAGAGAACTCTTTTAGGATGAAGGCGGCGGAGGGCAGAGAATCGGGACTGAGGAACTGGGGCAACGTACCTGCACCCTTCCAGAGGAAGAAACGTGAGGAAAACCGAATTAAGGGCTGCCTCCCGAGCCCCCTCACCAGGAGCAAATCGTTGAATGACATCAGGCGGTTCCCGTCGCCCACGCAAGTGGTGCGCCAGGTTTCTGAGGGTGGCATGGAGCTGAGCCCCAGCGCCGTGAGCCAAGACCAGCTGCAGATGGTCAGAGCCCGGGTCCATGAGAGTGAGGCCAAGTGGCACAATGACCTGACCAAGTGGAAGCTCCGGCGGCACAGGTCTAACTGTGACCTGCGGAGGAAGATGCAGGAGAGGGACAACATCGTCCTGATGGCCAACGCAGGGGTCGGTACAGTCGGGACATTCAATAGTCTGCAGGAGGACAGggaagaggatgaggagtccCTATGCAGCAATGGCCACAAGGTCTCTCCGTCCACCTCGTTCATGGAGGGTTCCCTGGTGCTCCGACCCCACACCAGAGCCCCCACCTCGGTAAGTGAGGGTTCCCTGGAGCTCCGACCCCACACCAGAGCTCCGCTGGCCCTCAGCTCCTCCGTGGAGTCACCCTACAGCCCCGGAGCGTCGGAACCCTTCACCGCCCCCAGTGTGACCCTCCAGGGACCCGGAGCCGTGCCCCAATCAGAGCCCCTCGTCCTAGAGGGGAGGCGTCACACACCGGTGGAGCCAGACGGAGCTGGAGGATTAGCCACTTTCCCCAactctgcctctcccatctcctcccagACCATCTCTAGCCCAGCTCTCTTCATCTCCACTGGACGAGACCACAACGTCTCCTTGCTCTCAAATGGGATCCCGACGACCCTCCCTGGATCTAGCTCCAGTCTTACTACTGGTACCAgttcttctctaactacctctgACCCGGTGAACGGTACCGGCTCTAACCTAACCAGCGGTACCGGCTCTAACCTAACCAGCGGTACCGGCTCCCACAACCCCTCTGCCTCCATGGACATCCCAGACCAAGccctcctctctactgtagagTCCCTGACCTCGGTGGGAGCCCCGGGTCATGTCTCAGCTCCCCAGCAGCAGGAGCTTCCCCTCTACAGGTACAGTTCCAGGGCTccgggaggaagaggaagaggatctgcctctctccccagggGATACCGCCGGTCTGAGGGCTCTTTGTCCTGCCTCTCTGCCGGCTTCACCCCCCGACCGTTTGGAGCCAAGTCCTCCAGAGTGTCCTCGCTACCCAGGCTCTACAATTTGGAGAACTCTCTGCTGAATGAAAATGGAAACGGTTCCCTGCTCCCCACCAAGACTGCTCCCACCCGCCCCCAGAAAATGGTCACTATCTCGGAGGTCGCTGTCAGGGCTCAGCCCTGGGCCACAGCCAATCAGAGCAGTGTGAACCAGGAAGTAGAGGAGGGTGGGAGTCAGACCCAGCCCTCCATCCTGAAGACCAGAGGGGTTCCTGGACCTGCCACCCACCCCAAACCCTTACCCCCTTCTCTCCGGCCCAGCCTCCCTGTCTCAGTCAGACAGAATGGCTCTGCCCAGGTACGTCACAGTGACAGGGTGAGTCTTACCTTGAAGATTAACAGTCGACCACACTTTGGTTTCAACACTCACTGGGACTCGACAGGAGCAAGAGTCGGAGGCATCCAACCAGgtaGTCCTGCAGAGTTGTGCCAGCTCCGTGCAGGTGATGAGATAGTGTCTGTTGGTGGGCACAGGGTGGCAGAGATGAGCCACAGCCAGTGGAAGGGCATGATGACCTCTGCCCTGCAGAAAGGCAGTCTCACCATGGATGTACAGCGCTATGGTCCAACTGACACCAGCAGAGATGCAACGATGATGAAACTGGCCCAGATCAACGGACAAGAGGTGCTGACCTCTAAGAGCAGTAAGGGAGGTTTTCAGGACGATCCCCTGACTATCAGAAGTAAAGGAGGATCGGCGTCGGCGATATCTGATCTCCAGGTGCCGTCCCTCAGCACCTCCCCCTCCAGTTGGTCCTGGGACcccgaggaagagaggaggaggcaggagaaGTGGCAGGAGGAGCAGGAGCGCCTCCTACAGgAGAAGTACCGTCAGGACCAGGAGAGGCTGGATGCTGAGTGGCAACAGGCCCAGGAGGAGGCAGGGGCGGAGAGATACAGGCAGGCTGAGGTGACCCCTGATCCTCTACCGTCCAGATGCATCGTGGGATATGTAGTCCCTTGTGTCAAATCATCCACACCGAACATGGAGAGCTCAGGAGAGATGACCAATGGGATCGCTAGCCTTGCCAGTCCTCAGCCAGTCTTGAGCCAGCCCATGGCCCCTGTTGCCATTGGCTGTTGCCATGTGGAATCCAATCCAAAGGAAGTTGTTTTTGACGGGGGAAGAAGGGAGGAGCCTCGTCCTCAAGAAGGGAGGAACCTGGAAGAGGAGACTGATGAAGTGGCAGGAGGAGATAAGTGGTCTGGGGACTCCTATGGTTTCACCCAGCTATCTATAGCTGACAGGATGAAATCCAAGTCCTCCCCATCGTTGGAGGGTTTCCACAGACAGGAGGTGAAAGGCGCTACCAGGGAGGTCGCTAGGAGGAAGCCTCCTCAGAGCATGTCGTTAGTAGAGGCTGAGAGGCAACAGATCCTGGAcgagatgaggaagaggaccgCTCTGCTGACCGACAACAGCTGGATACGACAACGCTCCACCTCTGACAACAGACAACCAACCAACCGGCGAGGGCCTATGAGGAGGTACGACTCTCTGGACAACCTTCCCTCTTCCGCCACCCTGCTCTCTAACCCCCAACGCCCCCACTCCTCCCTGGGTTTCGCCGCCCCGTACCGCCCCCCCTCCTCCCGGCACAGCATGGGTGTGGCCCTGGGGGGTTACTCCAACGGGACCCAGAAGCACAGCCCTACCTGGCCCCGCCCCTTCAGCACATCTTCCCCCCCGCCCAACACCGGAGAGGAACCCGCCACCGGCGAATCACGACCCGTCTCACAGCAGCACCACCGagtgCTGACTTCTCGTcaggtgtgttcagtgtgtgtgtgtcctatggGCAGAGGGGCTGCCATGGTCATTGAGACCCTGAACCTCTGCTTCCACCTGGCCTGTTTTCAGtgtgtgGACTGCAGGTGCCGACTtggagggtcagaggtcagagccCAGATCAGAATCAGCAACGGGAAGCCTTACTGTGACCCCTGCTACATCCGACTCAAGTCACACCTTGCCACCTCCCTGTGACCAGAATGCATTGCAGCAGATTGAGGAAGAGACGACGACAACCTCAAACACGACGGTGGAGATCTTGACTATGACCTCGTGTTGACCATGTATTTAGAGCTGGTTGACCTTTCTTTTAGGGAACAATGTACCGATTTATACTATTGGCTGTGACTCAAATGgcttcctattccctacatagtgcactactacccatagggctctggtcaaaagtagtgcactatgtagggaatagggggccgttTGGGACATGTCTCAAAGATGCAGTTTTGGCGTTCTTCCTAGTTAAttaactactgtacatgttgaCATACCCTATGTCTCTGACGAAGATGCAGTTTTGGCGTTCTTCCTAGTTAATTAACTACTGTACATGTCCACATACCCTATGTCTCTGACTAAGAATCAGTTTTGGCGTTCTTCCTAGTTAATTAACTACTGTACATGTCTGTAGCTTTTAATATGCAATCGATGGCTATCCACAACAATAGCTGGACACGTGTAGTTAAGAGCTATAGGGAGTTTTAAATCACAATTGGGATTTGTTTTTTTCTTGTTGATGACGTAAATTGATAAATGAGGCTCTATTAAATGAATCTAATAAATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
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A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

RNA id	RNA type	direction	distance	location	representative	gene id
TU2679623	lncRNA	upstream	18681	1360493 ~ 1361588 (+)	True	G2340219
TU2679626	lncRNA	upstream	22681	1357152 ~ 1357588 (+)	True	G2340222
TU2679625	lncRNA	upstream	26073	1353782 ~ 1354196 (+)	True	LOC118947132
TU2679614	lncRNA	upstream	40931	1339130 ~ 1339338 (+)	True	G2340213
TU2679516	lncRNA	upstream	41304	1336901 ~ 1338965 (+)	True	G2340154
XR_005041786.1	mRNA	upstream	25854	1353927 ~ 1354415 (+)	False	LOC118947132
XM_036972375.1	mRNA	upstream	46875	1305991 ~ 1333394 (+)	True	klf5a
XM_036972349.1	mRNA	upstream	78987	1216079 ~ 1301282 (+)	False	pibf1
XM_036972350.1	mRNA	upstream	80707	1216077 ~ 1299562 (+)	False	pibf1
XM_036972351.1	mRNA	upstream	80939	1216077 ~ 1299330 (+)	False	pibf1
TU2679504	other	upstream	79019	1279895 ~ 1301250 (+)	True	pibf1
TU2679512	other	upstream	171218	1207258 ~ 1209051 (+)	True	blzf1
TU2679430	other	upstream	261300	1116943 ~ 1118969 (+)	False	G2340118
TU2679448	other	upstream	261300	1116943 ~ 1118969 (+)	False	G2340118
TU2679153	other	upstream	407486	972479 ~ 972783 (+)	True	G2339955

gene	XLOC_000007 f7
RNA	TCONS_00000019
bioproject	PRJEB12982

economic fish

Basic

Function

Jbrowse2

Neighbor

Expression

RNA id: XM_036972364.1

Basic Information

Chromosome Information

Sequence

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

Expression Profile

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