RNA id: TU2678475


Basic Information

Item Value
RNA id TU2678475
length 340
lncRNA type intronic
GC content 0.48
exon number 1
gene id G2339474
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 444306 ~ 444645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacagacccctactacacacagctgaataaggacccctactacacacagctgaataaggacccctactacacacagctgaataagatccctactacacacagctgaataaggacccctactacacacagctgaataagacccctactacacacagctgaataaggacccctactacacacagctgaataaggacccctactacacacagctgaataaggacccctactacacacagctgaataaggacccctactacacacagctgaataagacccctactacacacagctgaataaggacccctactacacacagctgaataagacccctactacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678474 lncRNA upstream 1227 442811 ~ 443079 (+) True G2339473
TU2678473 lncRNA upstream 5373 438376 ~ 438933 (+) True G2339472
TU2678470 lncRNA upstream 7062 434447 ~ 437244 (+) True G2339469
TU2678469 lncRNA upstream 11172 432932 ~ 433134 (+) True G2339468
TU2678468 lncRNA upstream 11491 432532 ~ 432815 (+) True G2339467
TU2678476 lncRNA downstream 3619 448264 ~ 448496 (+) True G2339475
TU2678483 lncRNA downstream 19891 464536 ~ 464753 (+) True G2339481
TU2678484 lncRNA downstream 23841 468486 ~ 468784 (+) True G2339482
TU2678491 lncRNA downstream 40808 485453 ~ 485746 (+) True G2339488
TU2678492 lncRNA downstream 41146 485791 ~ 486026 (+) True G2339489
XM_036972373.1 mRNA upstream 139065 107069 ~ 305241 (+) False LOC118947131
XR_005041782.1 mRNA downstream 150858 595503 ~ 596337 (+) True LOC118947129
XM_036972394.1 mRNA downstream 317934 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 366842 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 366842 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 366842 811487 ~ 817841 (+) False si:ch73-41e3.7
TU2678285 other upstream 346450 97115 ~ 97856 (+) True G2339343
TU2678479 other downstream 18553 463198 ~ 464467 (+) True G2339478
TU2678903 other downstream 238699 683344 ~ 685548 (+) True G2339795
TU2679051 other downstream 426462 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 426462 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 426462 871107 ~ 873839 (+) False G2339912

Expression Profile