RNA id: TU2678532


Basic Information

Item Value
RNA id TU2678532
length 454
lncRNA type intronic
GC content 0.52
exon number 4
gene id G2339522
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 572707 ~ 588552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaagaccagagaggtagaggaagaccagagaggtagaggaagaccagaggtagaggaagaccagaggtagaggaagaccagaggtagaggaagaccagagaggtagaggaagaccagagaggtagaggaagaccagagaggtagaggaagacccgAGGTAGAGGAAGatcagaggtagaggaagacccgAGGTAGAGGAAGatcagaggtagaggaagaccataggtagaggaagaagagaggtagCGGAAGAAGAGAGGTAGCGGaagaccagagagatagaggaagaccagagaggtagagggagaccagagaggtagaggaagaccagagaagtagaggaagaccagagaggtagaggaagaccagaggtagaggaagaccagaggtagaggaagaccagagaggtagaggaagaccagagaggtagaggaagacaagagaggtagagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678526 lncRNA upstream 17796 554236 ~ 554911 (+) True G2339518
TU2678525 lncRNA upstream 19264 552813 ~ 553443 (+) True G2339517
TU2678524 lncRNA upstream 19502 552813 ~ 553205 (+) False G2339517
TU2678519 lncRNA upstream 25774 546340 ~ 546933 (+) True G2339512
TU2678492 lncRNA upstream 86681 485791 ~ 486026 (+) True G2339489
TU2678552 lncRNA downstream 23202 608336 ~ 609001 (+) False G2339532
TU2678557 lncRNA downstream 23202 608336 ~ 610581 (+) True G2339532
TU2678574 lncRNA downstream 70347 655481 ~ 657445 (+) True G2339547
TU2678578 lncRNA downstream 72668 657802 ~ 658162 (+) True G2339548
TU2678586 lncRNA downstream 90702 675836 ~ 676782 (+) True G2339554
XM_036972373.1 mRNA upstream 267466 107069 ~ 305241 (+) False LOC118947131
XR_005041782.1 mRNA downstream 10369 595503 ~ 596337 (+) True LOC118947129
XM_036972394.1 mRNA downstream 177445 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 226353 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 226353 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 226353 811487 ~ 817841 (+) False si:ch73-41e3.7
TU2678479 other upstream 108240 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 474851 97115 ~ 97856 (+) True G2339343
TU2678903 other downstream 98210 683344 ~ 685548 (+) True G2339795
TU2679051 other downstream 285973 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 285973 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 285973 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 285973 871107 ~ 873839 (+) False G2339912

Expression Profile