RNA id: TU2678909


Basic Information

Item Value
RNA id TU2678909
length 343
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2339801
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 693842 ~ 694184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACCTGCACTGTAAGCACTTTGACAACACAGCGACAGACAATTAAACCAGGCCTTCTGTATCTTCCATCTTCTTTACAACGACAAAAAAAAATCTCCAAAATAACAATTTTccccacacaaaaaaaacaccccAAGTGTTGATGGGAGAAGTCCAGGTTTCACAACTTCGGAAGAAGAAGAAAAGCAGCATCCTGAAATCACAAAGAACGGTCGTTATGAACATGTTCACCGTGTGGACACAGTATAAAAGTAGTGTGTTATTGATACACCTCTCTGAAGACAACACGAGACAATGTTTCCCAGTTCAGCCAGGCTACGGCCAGTGCCGTCTATGGGAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678901 lncRNA upstream 11672 680954 ~ 682170 (+) True G2339793
TU2678896 lncRNA upstream 13305 680080 ~ 680537 (+) True G2339791
TU2678586 lncRNA upstream 17060 675836 ~ 676782 (+) True G2339554
TU2678578 lncRNA upstream 35680 657802 ~ 658162 (+) True G2339548
TU2678574 lncRNA upstream 36397 655481 ~ 657445 (+) True G2339547
TU2678928 lncRNA downstream 9752 703936 ~ 704424 (+) True G2339815
TU2678929 lncRNA downstream 11484 705668 ~ 706110 (+) True G2339816
TU2678930 lncRNA downstream 12014 706198 ~ 706486 (+) True G2339817
TU2678936 lncRNA downstream 14939 709123 ~ 710846 (+) True G2339823
TU2678961 lncRNA downstream 33136 727320 ~ 727543 (+) True G2339843
XR_005041782.1 mRNA upstream 97505 595503 ~ 596337 (+) True LOC118947129
XM_036972373.1 mRNA upstream 388601 107069 ~ 305241 (+) False LOC118947131
XM_036972394.1 mRNA downstream 68395 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 117303 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 117303 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 117303 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA downstream 118355 812539 ~ 817121 (+) True si:ch73-41e3.7
TU2678903 other upstream 8294 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 229375 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 595986 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 176923 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 176923 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 176923 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 176923 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 278295 972479 ~ 972783 (+) True G2339955

Expression Profile