RNA id: TU2678929


Basic Information

Item Value
RNA id TU2678929
length 443
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G2339816
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 705668 ~ 706110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttaagggcgctgtactgcagcgccagctgtgccatcagagtccctgggttcgcgcccaggcactgtcgtaaccggccgcgaccgggaggtccgtggggcgacgcacaattggcctagcgtcgtccgggttagggagggattggtcggtagggatctccttgtctcatcgcgcaccagcgactcctgtggcgggctgggcgcagtgcgcgctagccaaggttgccaggtgcacggtgtagcctctgacacattggtgcggctggcttccgggttggatgcgcgctgtgttaagaagcagtatggctggttgggttgtgtatcggaggatgcatgacattcaaccttcgtctctcccgagcccgtacgggagttgtagcgatgagacaagatagtagctactacaacaattggataccacgaaattggggagaaaaaggggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678928 lncRNA upstream 1244 703936 ~ 704424 (+) True G2339815
TU2678909 lncRNA upstream 11484 693842 ~ 694184 (+) True G2339801
TU2678901 lncRNA upstream 23498 680954 ~ 682170 (+) True G2339793
TU2678896 lncRNA upstream 25131 680080 ~ 680537 (+) True G2339791
TU2678586 lncRNA upstream 28886 675836 ~ 676782 (+) True G2339554
TU2678930 lncRNA downstream 88 706198 ~ 706486 (+) True G2339817
TU2678936 lncRNA downstream 3013 709123 ~ 710846 (+) True G2339823
TU2678961 lncRNA downstream 21210 727320 ~ 727543 (+) True G2339843
TU2678965 lncRNA downstream 27967 734077 ~ 734278 (+) True G2339847
TU2678966 lncRNA downstream 28183 734293 ~ 746736 (+) True G2339848
XR_005041782.1 mRNA upstream 109331 595503 ~ 596337 (+) True LOC118947129
XM_036972373.1 mRNA upstream 400427 107069 ~ 305241 (+) False LOC118947131
XM_036972394.1 mRNA downstream 56469 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 105377 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 105377 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 105377 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA downstream 106429 812539 ~ 817121 (+) True si:ch73-41e3.7
TU2678903 other upstream 20120 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 241201 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 607812 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 164997 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 164997 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 164997 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 164997 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 266369 972479 ~ 972783 (+) True G2339955

Expression Profile