RNA id: TU2678936


Basic Information

Item Value
RNA id TU2678936
length 228
lncRNA type intronic
GC content 0.38
exon number 2
gene id G2339823
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 709123 ~ 710846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attcacaccaacagccaggtcattatactacaatacagtattcacaccaacagccaggtcattatactacaatacagtattcacaccagaggtcattatactacaatacagtattcacaccaacagccacgtcattatactacaatacagtattcacaccaacagccaggtcattatactacaatacagtattcacaccaacagccaggtcattatactacaatacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678930 lncRNA upstream 2637 706198 ~ 706486 (+) True G2339817
TU2678929 lncRNA upstream 3013 705668 ~ 706110 (+) True G2339816
TU2678928 lncRNA upstream 4699 703936 ~ 704424 (+) True G2339815
TU2678909 lncRNA upstream 14939 693842 ~ 694184 (+) True G2339801
TU2678901 lncRNA upstream 26953 680954 ~ 682170 (+) True G2339793
TU2678961 lncRNA downstream 16474 727320 ~ 727543 (+) True G2339843
TU2678965 lncRNA downstream 23231 734077 ~ 734278 (+) True G2339847
TU2678966 lncRNA downstream 23447 734293 ~ 746736 (+) True G2339848
TU2678972 lncRNA downstream 31313 742159 ~ 743553 (+) True G2339853
TU2678980 lncRNA downstream 41002 751848 ~ 753104 (+) False G2339858
XR_005041782.1 mRNA upstream 112786 595503 ~ 596337 (+) True LOC118947129
XM_036972373.1 mRNA upstream 403882 107069 ~ 305241 (+) False LOC118947131
XM_036972394.1 mRNA downstream 51733 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 100641 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 100641 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 100641 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA downstream 101693 812539 ~ 817121 (+) True si:ch73-41e3.7
TU2678903 other upstream 23575 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 244656 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 611267 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 160261 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 160261 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 160261 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 160261 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 261633 972479 ~ 972783 (+) True G2339955

Expression Profile