RNA id: TU2678965


Basic Information

Item Value
RNA id TU2678965
length 202
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G2339847
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 734077 ~ 734278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagaaCAACACAGGGAGAGGCAAGATGGAGACCGGCTCTCTCTGAAGAACACAAACCCAGCACCCAACGCATAAAGAAAAACACTCAATAGTTCCTCCTTTAAGATCCTACGAAGCTCAACTCCGGGCTTGACAGATGTAAAGATTTTAATCTTGAGATTTAACCACGTCCACAGTGTTACAGGAAGAGGCTGCAGACAGAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678961 lncRNA upstream 6534 727320 ~ 727543 (+) True G2339843
TU2678936 lncRNA upstream 23231 709123 ~ 710846 (+) True G2339823
TU2678930 lncRNA upstream 27591 706198 ~ 706486 (+) True G2339817
TU2678929 lncRNA upstream 27967 705668 ~ 706110 (+) True G2339816
TU2678928 lncRNA upstream 29653 703936 ~ 704424 (+) True G2339815
TU2678966 lncRNA downstream 15 734293 ~ 746736 (+) True G2339848
TU2678972 lncRNA downstream 7881 742159 ~ 743553 (+) True G2339853
TU2678980 lncRNA downstream 17570 751848 ~ 753104 (+) False G2339858
TU2678981 lncRNA downstream 17570 751848 ~ 753684 (+) False G2339858
TU2678985 lncRNA downstream 17570 751848 ~ 753684 (+) True G2339858
XR_005041782.1 mRNA upstream 137740 595503 ~ 596337 (+) True LOC118947129
XM_036972373.1 mRNA upstream 428836 107069 ~ 305241 (+) False LOC118947131
XM_036972394.1 mRNA downstream 28301 762579 ~ 768787 (+) True LOC110495334
XM_036972370.1 mRNA downstream 77209 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 77209 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 77209 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA downstream 78261 812539 ~ 817121 (+) True si:ch73-41e3.7
TU2678903 other upstream 48529 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 269610 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 636221 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 136829 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 136829 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 136829 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 136829 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 238201 972479 ~ 972783 (+) True G2339955

Expression Profile