RNA id: TU2679007


Basic Information

Item Value
RNA id TU2679007
length 1254
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G2339875
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 793735 ~ 797599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATAGACAGGCCCAGTCAAGAACCAtgatggaggatgttacagtatagaCCGGCCCAGTCAAGAACCATGGAGGATGTTACTCACAGTATAGACAGGCCCAGTCAAGAACCAtgatggaggatgttacagtatagaCCGGCCCAGTCAAGAACCATGGAGGATGTTACTCACAGTATAGACAGGCCCAGTCAAGAACCAtgatggaggatgttacagtatagaCCGGCCCAGTCAAGAACCAtgatggaggatgttacagtatagaCCGGCCCAGTCAAGAACCATGGAGGATGTTACTCACAGTATAGACCGGCCCAGTCAAGAACCATGATGGAGGATGTTACAGTATAGACAGGCCCAGTCAAGAACCAtgatggaggatgttacagtatagaCCGGCCCAGTCAAGAACCAtgatggaggatgttacagtatagaCCGGCCCAGTCAAGAACCAtgatggaggatgttacagtatagaCCGGCCCAGTCAAGAAccatggaggatgttacagtatagaCCGGCCCAGTCAAGAACCAtgatggaggatgttacagtatagaCCGGCCCAGTCAAGAACCAtgatggaggatgttacagtatagaCCGGCCCAGTCAAGAACCAtgatggaggatgttacagtatagaCCGGCCCAGTCAAGAACCAtgatggaggatgttacagtatagaCCGGCCCAGTCAAGAACCATGATGGAGGATGTTACTCACAGTATAGACAGTCCCAGTATGTTGTCTAGAGCCGTAATGGAGGACTTGGTCAGCGGTTTCCACTTCTCCTGACCTTTCAGCTTCCGGGGACCTGCAACTGTGccacctttcttcttcttctgtggttttgGCTGAGGGATCTGGCTGCTGGTTCCTGGCTGGGGCTCCTCCTGGAGAGGAGGGTACACGCGGACAGAATGATGTGATGAAAACAAAAAGGAGAACCGTATTCTCTCAGAGGTTTAATTCTTCAGAACTTTCTCACCTGAGATACTCTCCGTTGACGTGTCTTTATACCGGGCTTATTTGGCTTCTCGCCTGTCTTCTTGCCTTTAGGTGTCTTGGATGCGGCGCGTTCAGATCCCCGGACAGGCTTCATAATTTTAACTAGGAAAAAGAGACAACGTCAGACAGACAACTAACTAAATCAAGGCATACATGGGAAAAGTGGGGGGGAAACATAGCCGCTAAATAGATAATGATATGATATACAATCTGAAAGCTAGCAAACATGAGCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678986 lncRNA upstream 38662 753948 ~ 755073 (+) False G2339859
TU2678988 lncRNA upstream 38662 753948 ~ 755073 (+) True G2339859
TU2678981 lncRNA upstream 40051 751848 ~ 753684 (+) False G2339858
TU2678985 lncRNA upstream 40051 751848 ~ 753684 (+) True G2339858
TU2678980 lncRNA upstream 40631 751848 ~ 753104 (+) False G2339858
TU2679005 lncRNA downstream 257 796530 ~ 797599 (+) True G2339875
TU2679023 lncRNA downstream 28855 825128 ~ 826439 (+) True G2339891
TU2679028 lncRNA downstream 35532 831805 ~ 832307 (+) True G2339896
TU2678998 lncRNA downstream 38675 834948 ~ 838462 (+) True G2339869
TU2679032 lncRNA downstream 45233 841506 ~ 843332 (+) False G2339899
XM_036972394.1 mRNA upstream 24948 762579 ~ 768787 (+) True LOC110495334
XR_005041782.1 mRNA upstream 197398 595503 ~ 596337 (+) True LOC118947129
XM_036972373.1 mRNA upstream 488494 107069 ~ 305241 (+) False LOC118947131
XM_036972370.1 mRNA downstream 15214 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 15214 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 15214 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA downstream 16266 812539 ~ 817121 (+) True si:ch73-41e3.7
XR_005041788.1 mRNA downstream 149179 945452 ~ 946013 (+) False LOC118947137
TU2678903 other upstream 108187 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 329268 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 695879 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 74834 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 74834 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 74834 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 74834 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 176206 972479 ~ 972783 (+) True G2339955

Expression Profile