RNA id: TU2679005



Basic Information


Item Value
RNA id TU2679005
length 1070
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G2339875
representative True

Chromosome Information


Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 793735 ~ 797599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAGCGGCAAGCAGGCCACTCCAGGCGGCCATGATGGAAAGGGCAATGAGGGCACTCCTCATAGAGGATGATAGGGGCCTCTAGTGGCCCAAAAGGACGTATTAGGCAGCGTTCTTCTCCTTAGCACAATTTACAAGTATGGCTCTCTCTGGCCTCTCCATGTTTCCCCAGCCACCATCACTCCCAATCCAAACCCCCTGAAACGGCTTTCTTAATTCAATGCACGTCTTCAAGAGGAAGTGCGTTCCAGGTCCATTCCACTCCTCggtgggcagcgccattgagggcgttcaccattttaaatattaaactgggtgggactttcaacttcattggctgatccctcctggtgaccctTTTGGAGTCTGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTagctatataatataatatactggttAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTagctatataatataatatactggttAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTagctatataatataatatactggttAGATGGGGTTTAGCTATATAATATAATGGTTAGATGGGGTTTGGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGATGGGGTTTAGCTATATAATATACTGGTTAGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2679007 lncRNA upstream 257 793735 ~ 796273 (+) False G2339875
TU2678986 lncRNA upstream 41457 753948 ~ 755073 (+) False G2339859
TU2678988 lncRNA upstream 41457 753948 ~ 755073 (+) True G2339859
TU2678981 lncRNA upstream 42846 751848 ~ 753684 (+) False G2339858
TU2678985 lncRNA upstream 42846 751848 ~ 753684 (+) True G2339858
TU2679023 lncRNA downstream 27529 825128 ~ 826439 (+) True G2339891
TU2679028 lncRNA downstream 34206 831805 ~ 832307 (+) True G2339896
TU2678998 lncRNA downstream 37349 834948 ~ 838462 (+) True G2339869
TU2679032 lncRNA downstream 43907 841506 ~ 843332 (+) False G2339899
TU2679033 lncRNA downstream 43907 841506 ~ 842550 (+) True G2339899
XM_036972394.1 mRNA upstream 27743 762579 ~ 768787 (+) True LOC110495334
XR_005041782.1 mRNA upstream 200193 595503 ~ 596337 (+) True LOC118947129
XM_036972373.1 mRNA upstream 491289 107069 ~ 305241 (+) False LOC118947131
XM_036972370.1 mRNA downstream 13888 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972372.1 mRNA downstream 13888 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA downstream 13888 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA downstream 14940 812539 ~ 817121 (+) True si:ch73-41e3.7
XR_005041788.1 mRNA downstream 147853 945452 ~ 946013 (+) False LOC118947137
TU2678903 other upstream 110982 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 332063 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 698674 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 73508 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 73508 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 73508 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 73508 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 174880 972479 ~ 972783 (+) True G2339955

Expression Profile