RNA id: TU2679023


Basic Information

Item Value
RNA id TU2679023
length 562
lncRNA type antisense_over
GC content 0.58
exon number 2
gene id G2339891
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 825128 ~ 826439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actcctttcttccctcccttcctctccccctacctccctccctccccctcctcctaatCATTAGGTAGAGGATCATATACACAGATGTGGGCCTCAGGACAGAGATGTGTGGTGATTGGTCGACCTGGCTGTGAGGTCACTTCCTGTAGGgtgagtggtgggggggggggggggggggggtcgtcagAGAGTGTCTTGGGGGGGCGAGACAGGGGGGCAGGAGTGGGACTTAATGCTGTTGTGTTTACTGTCTGCCTCGTCGAAGTCTAACAGTCGATCGTTGACGTTGACGTCCATACAGCCGTGGTAGTAGGCTGTCACTGGGGTGGCGGAGACTGGGACCTCTGGCAGTCCTCCTATACATGTCCTGACAGAGTGTGTCATCATCGTGTTGTTGAGTCGATCCAGCGCCCCGTCAGGGAGGCTGTAGGACCAGGTGGAGGTGTTGGCGACGATCTCCAGGCTAGTGGGGGTGACAGTCAGTCCTACAGACAGACGGTCTGGGTAACACAGCATCAACGACTGCAGCGTTGCCACGGACACTCCATCCAGGAACACCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679005 lncRNA upstream 27529 796530 ~ 797599 (+) True G2339875
TU2679007 lncRNA upstream 28855 793735 ~ 796273 (+) False G2339875
TU2678986 lncRNA upstream 70055 753948 ~ 755073 (+) False G2339859
TU2678988 lncRNA upstream 70055 753948 ~ 755073 (+) True G2339859
TU2678981 lncRNA upstream 71444 751848 ~ 753684 (+) False G2339858
TU2679028 lncRNA downstream 5366 831805 ~ 832307 (+) True G2339896
TU2678998 lncRNA downstream 8509 834948 ~ 838462 (+) True G2339869
TU2679032 lncRNA downstream 15067 841506 ~ 843332 (+) False G2339899
TU2679033 lncRNA downstream 15067 841506 ~ 842550 (+) True G2339899
TU2679036 lncRNA downstream 20438 846877 ~ 848091 (+) True G2339902
XM_036972372.1 mRNA upstream 7287 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 7287 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 8007 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 8007 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972394.1 mRNA upstream 56341 762579 ~ 768787 (+) True LOC110495334
XR_005041788.1 mRNA downstream 119013 945452 ~ 946013 (+) False LOC118947137
XM_036972352.1 mRNA downstream 153154 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 153154 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 153155 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 375598 1202037 ~ 1208674 (+) False blzf1
TU2678903 other upstream 139580 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 360661 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 727272 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 44668 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 44668 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 44668 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 44668 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 146040 972479 ~ 972783 (+) True G2339955

Expression Profile