RNA id: TU2678998


Basic Information

Item Value
RNA id TU2678998
length 2571
lncRNA type antisense_over
GC content 0.50
exon number 4
gene id G2339869
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 834948 ~ 838462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAACCAGCTAGAGACAGTCATGTTGGACAGGTGACTAATATAACCAGCTAGAGACAGTCATGTTGGACAGAGGACTAATATAACCAGCTAGAGACAGTCAGGTTGGACAGGTGACTAATATAACCAGCTAGAGACAGTCAGGTTGGACAGGTGACTAATATAACCAGCTAGAGACAGTCAGGTTGGACAGAGGACTAATATAACCAGCTATAGACAGTCAGGTTGGACAGAGGACTAATATAACCAGCTAGAGACAGTCAGGTTGGACAGGTGACTAATATAACCAGCTAGAGACAGTAAGGTTGGACAGGTGACTAATATAACCAGCTAGAGACAGTAAAAGACAGGCAGTCAGGTTGGACAGATGACTAATATAACCAGCTAGAGACAGTAAAACGTAATCAGTGATGTAATCCACGAGCCAGTCTTACCACATGCCACTGTCCGTCGTTGATGGCCTTGCCCCCGCTGGTGACCTTCAGGGAGTGCTGGGTCTTGAACTGGACCTCgatccgtcctcccctcagccccAGCATGAACCACGAGTCCTGGGAAGACTCTGCGTACAGAACCACCCCTTCTGGATCAAACGTCCGGAAGTCAAACTCTGCAGCAAACCTGGAGACACACGACCCAGACGACCCAGACGATTTAGGGTACAGTTgtgtagtcaaatcaaatcaaatgtatttgtcacatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagagtGAACAGGACTGCATGTCTGTCTCTGCCTCGGTGTGTTTAAACCCCCTTACTTGGTGTTCTCCGGTAGTCTGAAGCGGAGGTATATGACAGGCCCTCCGGTGAATTGTTCTCCCAGGTACAGCATCTCAGGGTGTTTGTAGTCGTAGAGCTGGACACACACCGGCACCTCCTCGCAAGAACGCTGGTCCTCCGCTAACCGCAGGCCCTGACGACCTTCGCAGCGGCAGGAGTAGCTACCCATCGTGTTCACACACACGCCCTCACACACGCCCACCTCGCACTCGTCGACATCTGGGGACAATCACGAGCGTCAGGCGGAGAgggtagaggtcagaggtcattacaggaggtacagggtcagggttaagaTCAGTTGATACCAAAAGTTCCATTAGGTccttggtagcctagtggttagagtgtagaggaggcaggtagtctagtggttagagtgtagaggaggcaggtagcctagtggttagagtgtagaggaggcaggtagcctagtggttagagtgtagaggcggcaggtagcctagtggttagagtgtagaggaggcaggtaacctagtggttagagtgtagaggcaggtagcctagtggttagagtgtagaggaggcaggtagcctagtggttagagtgtagaggcggcaggtagtctagtggttagagtgtagaggaggcaggtagcctagtggttagagtgtagaggaggcaggtagcctagtggttagagtgtagaggaggcaggtagcctagtggttagagtgtagaggaggcaggtagcctagtggttagagtgtagaggaggcaggtagcctagtggttagagtgtagaggcggcaggtagcctagtggttagagtgtagaggaggcaggtaacctagtggttagagtgtagaggcaggtagcctagtggttagagtgtagaggaggcaggtagcctagtggttagagtgtagaggcggcaggtagcctagtggttagagtgtagaggaggcaggtaacctagtggttagagtgtagaggcaggtagcctagtggttagagtgtagaggaggcaggtagcctagtggttagagtgtagaggaggcaggtagcctagtggttagagtgtagaggaggcaggtagcctagtggttagagtgtagaggcggcaggtagcctagtggttagagtgtagaggcggcaggtagcctagtggttagagtgtagaggaggcaggtaacctagtggttagagtgtagaggcaggtagcctagtggttagagtgtagaggcggcaggtagcctagtggttacagagttgggccagtaaccaaaaggttcctagatcgaatccctgagctgacaaggtaaaaatctgaccTTCTGcaactgaacaaggcagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacccactgttcctagactagttaacccactgttcctagaccagttaacccactgttcctagggccgtcattgtaaataagaacttgttcatAACTGACCTGACTAGTTAAATTAACATGTTCCTGTCTGTGATAGTGTCTTTCTCATGTGGTCAGTGTAGGTACAGTGGAGTGGCATCTCACCCAAACAGGAACGCAAGGTGAAGTTGTAACTGAAGCCCGGGGGACACTGGCACTCATACATGCCAGGGTTGTTGACACATTTAGCCGGTTCTTCACAGATACTGGGGTACAGCAGACACTCATTGATATCTGGGGAGGGAACACATTTAGCTGGTTCCTCAGAGATATTGGGGTACAGCAGACACTCTCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679028 lncRNA upstream 2641 831805 ~ 832307 (+) True G2339896
TU2679023 lncRNA upstream 8509 825128 ~ 826439 (+) True G2339891
TU2679005 lncRNA upstream 37349 796530 ~ 797599 (+) True G2339875
TU2679007 lncRNA upstream 38675 793735 ~ 796273 (+) False G2339875
TU2678986 lncRNA upstream 79875 753948 ~ 755073 (+) False G2339859
TU2679032 lncRNA downstream 3044 841506 ~ 843332 (+) False G2339899
TU2679033 lncRNA downstream 3044 841506 ~ 842550 (+) True G2339899
TU2679036 lncRNA downstream 8415 846877 ~ 848091 (+) True G2339902
TU2679025 lncRNA downstream 9968 848430 ~ 852521 (+) True G2339893
TU2679024 lncRNA downstream 14391 852853 ~ 857330 (+) True G2339892
XM_036972372.1 mRNA upstream 17107 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 17107 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 17827 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 17827 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972394.1 mRNA upstream 66161 762579 ~ 768787 (+) True LOC110495334
XR_005041788.1 mRNA downstream 106990 945452 ~ 946013 (+) False LOC118947137
XM_036972352.1 mRNA downstream 141131 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 141131 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 141132 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 363575 1202037 ~ 1208674 (+) False blzf1
TU2678903 other upstream 149400 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 370481 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 737092 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 32645 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 32645 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 32645 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 32645 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 134017 972479 ~ 972783 (+) True G2339955

Expression Profile