RNA id: TU2679032


Basic Information

Item Value
RNA id TU2679032
length 455
lncRNA type intronic
GC content 0.35
exon number 2
gene id G2339899
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 841506 ~ 843332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtaagtgttacctgtacagtggatctatataactgtaactgttacctgtacagtggatctatataactgttacctgtacagtggatctatataacagtaattgttacctgtacagtggatctatataacagtaactgttacctgtacagtggatctatataactgttacctgtacagtggatctatataactgttacctgtacagtggatctatataacagtaactgttacctgtacagtggatctatataactgtttcctgtacagtggatctatataacagtaagtgttacctgtacagtggatctatataacTGTTACCTGTACAGTGTATCTATATAACAGTAAGTGTTACCTGTACAGTGTATCTATATAACAGTAAgtgttacctgtacagtggatctatataacagtaattgttacctgtacagtggatctatataacAGTAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2678998 lncRNA upstream 3044 834948 ~ 838462 (+) True G2339869
TU2679028 lncRNA upstream 9199 831805 ~ 832307 (+) True G2339896
TU2679023 lncRNA upstream 15067 825128 ~ 826439 (+) True G2339891
TU2679005 lncRNA upstream 43907 796530 ~ 797599 (+) True G2339875
TU2679007 lncRNA upstream 45233 793735 ~ 796273 (+) False G2339875
TU2679036 lncRNA downstream 3545 846877 ~ 848091 (+) True G2339902
TU2679025 lncRNA downstream 5098 848430 ~ 852521 (+) True G2339893
TU2679024 lncRNA downstream 9521 852853 ~ 857330 (+) True G2339892
TU2679044 lncRNA downstream 21446 864778 ~ 867417 (+) False G2339909
TU2679045 lncRNA downstream 21728 865060 ~ 867144 (+) True G2339909
XM_036972372.1 mRNA upstream 23665 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 23665 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 24385 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 24385 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972394.1 mRNA upstream 72719 762579 ~ 768787 (+) True LOC110495334
XR_005041788.1 mRNA downstream 102120 945452 ~ 946013 (+) False LOC118947137
XM_036972352.1 mRNA downstream 136261 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 136261 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 136262 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 358705 1202037 ~ 1208674 (+) False blzf1
TU2678903 other upstream 155958 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 377039 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 743650 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 27775 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 27775 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 27775 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 27775 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 129147 972479 ~ 972783 (+) True G2339955

Expression Profile