RNA id: TU2679025


Basic Information

Item Value
RNA id TU2679025
length 1677
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2339893
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 848430 ~ 852521 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTAAGGTAAACTACGGACCTCATTGAAGACTAAATGAGGCCGGCGGGAATTATTTTAGTTGACAACCCTTCTCTAAACCAACCCGTAGCCCTGACCTCTGAACCCCAACAACGGCCTCTAACCTTTACCAACCTTTGACACAGGTTCTGAGGTTTGAAGGGACGTTGGAGTCTCCAGAGTTCTGGTTGTTGATGCCCACACGATGTGAACCCAGACAAACTGAAATCCAACACAGTGGGGTTATATTAGCTGGCATCAGTCATAtcatcagacagacaacacagtggGGTTATATTAGCTGACATCAGTCATAtcatcagacaacaacacagtgggGTTATATTAGCTGACATCAGTCATAtcatcagacaacaacacagtgggGTTATATTAGCTGACATCAGTCAtatcatcagacagacagacaacacagtggGGTTATATTAGCTGACATCAGTCAtatcatcagacagacagacaacacagtggGGTTATATTAGCTGACATCAGTCAtatcatcagacagacagacaacaacacagtgggGTTATATTAGCTGACATCAGTCATAtcatcagacaacaacacagtggggttatattagctggcatcagacagacaacacagtggGGTTATATTAGCTGACATCAGTCAtatcatcagacagacagacaacacagtggggttatattagctgacatcagacagacaacacagtggGGTTATATTAGCTGACATCAGTCATAtcatcagacagacaacacagtggGGTTATATTAGCTGACATCAGTCATAtcatcagacaacaacacagtggggttatattagctgacatcagacagacaagacagtggGGTTATATTAGCTGGCATCAGTCATAtcatcagacaacaacacagtgggGTTATATTAGCTGGCATCAGTCATAtcatcagacaacaacacagtgggGTTATATTAGCTGGCATCAGTCATATcatcagacagacaacaacacagtggggttatattagctgacatcagacagacaacaacacagtggggttatattagctgacatcagacagacagacaacaacacagtggggttatattagctgacatcagacagacagacaacaacacagtgggGTTATATTAGCTGGCATCAGTCATAtcatcagacagacaacaacacagtgggGTTATATTAGCTGACATCAGTCATAtcatcagacagacaacacagtggGGTTATATTAGCTGACATCAGTCATAtcatcagacaacaacacagtgggGTTATATTAGCTGACATCAGTCATAtcatcagacagacaacacagtggGGTTATATTAGCTGGCATCAGTCATAtcatcagacaacaacacagtggggttatattagctgacatcagacagacaacacagtggggttatattagctgacatcagacagacaacacagtggGGTTATATTAGCTGACATCAGTCATAtcatcagacagacaacacagtggTGTTATATTAGCTGACATCAGTCACATGATAACTCATTGAGGAACGGGTGGCTGAGGGTCAGCTAGATTCTATATCGCTAGATGTTGTTAATGGAAACATGTCTGAAAACAGGACTTCAACAGAGTGGTCTGGGTTTGAAGGGACTGGCTGAAAGGGACTGGCTGAAAGGGACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679036 lncRNA upstream 339 846877 ~ 848091 (+) True G2339902
TU2679032 lncRNA upstream 5098 841506 ~ 843332 (+) False G2339899
TU2679033 lncRNA upstream 5880 841506 ~ 842550 (+) True G2339899
TU2678998 lncRNA upstream 9968 834948 ~ 838462 (+) True G2339869
TU2679028 lncRNA upstream 16123 831805 ~ 832307 (+) True G2339896
TU2679024 lncRNA downstream 332 852853 ~ 857330 (+) True G2339892
TU2679044 lncRNA downstream 12257 864778 ~ 867417 (+) False G2339909
TU2679045 lncRNA downstream 12539 865060 ~ 867144 (+) True G2339909
TU2679079 lncRNA downstream 18073 870594 ~ 870928 (+) True G2339917
TU2679070 lncRNA downstream 18426 870947 ~ 873839 (+) False G2339912
XM_036972372.1 mRNA upstream 30589 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 30589 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 31309 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 31309 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972394.1 mRNA upstream 79643 762579 ~ 768787 (+) True LOC110495334
XR_005041788.1 mRNA downstream 92931 945452 ~ 946013 (+) False LOC118947137
XM_036972352.1 mRNA downstream 127072 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 127072 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 127073 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 349516 1202037 ~ 1208674 (+) False blzf1
TU2678903 other upstream 162882 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 383963 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 750574 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 18586 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 18586 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 18586 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 18586 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 119958 972479 ~ 972783 (+) True G2339955

Expression Profile