RNA id: TU2679024


Basic Information

Item Value
RNA id TU2679024
length 2431
lncRNA type antisense_over
GC content 0.54
exon number 4
gene id G2339892
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 852853 ~ 857330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGGGACTGGCTGAAAGGGACGGGCTGAAAACAGGACTTCAACAGAGTGCAGAAGGGTTGAAACTTACAGACATATTGAGGATAGAAGTGTTCCTGTAAAAAAAGAGGAGACATTATTAGCAGACGCCTCGTGTCCGTCTGGGTTCTTAAACCAGTCAACAGCTTGAGGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACATCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACATCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGCCCCGCTCCATCCCACTCAGCGACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGCCTCGCTCCATCCCACTCAGCTACGTCAACACTAGTCGATGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCTATCCCACTCAGCTACGTCAACACTAGTCGACGTCCCGCTCCATCCTACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCTACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCGACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCGACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAGCACTAGTCAACGCCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGCCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCAGCTCCATCCCACTCAGCTACGTCAACACTAGTCGACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCGACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCGACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGCCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTTAAATACTAGTCAACGCCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCAACGCCCCGCTCCATCCCACTCAGCTACATCAACACTAGTCAACGTCCCGCTCTATCCCACTCAGCTACGTCAACACCAGTCAACGTCCCGCTCTATCCCACTCAGCTACGTTAAATACTAGTCAACGTCCCGCTCTATCCCACTCAGCTACGTCAACACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTTAAATACTAGTCAACGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCGATGTCCCGCTCCATCCCACTCAGCTACGTCAACACTAGTCGATGTCCCCAGGTCCCTCCTGACATGACCATCTAGTGACTaccctctccctcggtccCTCCTGACATGACTATCTAGtgactatcctctctctctccccaggtccCTCCTGACATGACCATCTAGTAAGTAGTGTGCCAGGGGCCCTCAGGAGCCACTCACCGTCTCCGGGTAGTTCTCAAAGATCTCCCTTGCCTCCTCCTTGTTGCACAGCTCCTCGATACATTCTCTCTCCAGGTTACCTTTCTTACTCTCCTCAAACATGGAGTTGGCCCTGCGGTGCCGAGACAGAAACTGGGAGGCCCTGTTCTGAGTTAGGACTGGAGACACACACGTGTAACTGGGTTGGTTATATTTTCACTTGCAACTCCAGAAATATGTATTCAATGTTTTATGCGTTTCTATTGGTTGTGTAAGGACGGACGCTGAGAGACAAGGATACAAGTACAGGGAGTTAACAGTTAATAAACAAGGAGAGTTAACAGTTAATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679025 lncRNA upstream 332 848430 ~ 852521 (+) True G2339893
TU2679036 lncRNA upstream 4762 846877 ~ 848091 (+) True G2339902
TU2679032 lncRNA upstream 9521 841506 ~ 843332 (+) False G2339899
TU2679033 lncRNA upstream 10303 841506 ~ 842550 (+) True G2339899
TU2678998 lncRNA upstream 14391 834948 ~ 838462 (+) True G2339869
TU2679044 lncRNA downstream 7448 864778 ~ 867417 (+) False G2339909
TU2679045 lncRNA downstream 7730 865060 ~ 867144 (+) True G2339909
TU2679079 lncRNA downstream 13264 870594 ~ 870928 (+) True G2339917
TU2679070 lncRNA downstream 13617 870947 ~ 873839 (+) False G2339912
TU2679053 lncRNA downstream 13777 871107 ~ 900840 (+) False G2339912
XM_036972372.1 mRNA upstream 35012 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 35012 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 35732 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 35732 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972394.1 mRNA upstream 84066 762579 ~ 768787 (+) True LOC110495334
XR_005041788.1 mRNA downstream 88122 945452 ~ 946013 (+) False LOC118947137
XM_036972352.1 mRNA downstream 122263 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 122263 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 122264 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 344707 1202037 ~ 1208674 (+) False blzf1
TU2678903 other upstream 167305 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 388386 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 754997 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 13777 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 13777 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 13777 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 13777 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 115149 972479 ~ 972783 (+) True G2339955

Expression Profile