RNA id: TU2679079


Basic Information

Item Value
RNA id TU2679079
length 335
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G2339917
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 870594 ~ 870928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcccctgtaattattccccaggtcattgtctaatcattcctcctctcccctgtaactattccccaggtcgttgtctaatcattcctcctctcccctgtaactattccccaggtcgttgtctaatcattcctcctctcccctgtaactattccccaggtcgttgtctaatcattcctcctctcccctgtaactattccccaggtcgttgtctaatcattcctcctctcccctgtaactattccccaggtcgttgtctaatcattcctcctctcccctgtaactattccccaggtcgttgtctaatcattcctcctctcccctgtaactattcccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679044 lncRNA upstream 3177 864778 ~ 867417 (+) False G2339909
TU2679045 lncRNA upstream 3450 865060 ~ 867144 (+) True G2339909
TU2679024 lncRNA upstream 13264 852853 ~ 857330 (+) True G2339892
TU2679025 lncRNA upstream 18073 848430 ~ 852521 (+) True G2339893
TU2679036 lncRNA upstream 22503 846877 ~ 848091 (+) True G2339902
TU2679070 lncRNA downstream 19 870947 ~ 873839 (+) False G2339912
TU2679053 lncRNA downstream 179 871107 ~ 900840 (+) False G2339912
TU2679058 lncRNA downstream 179 871107 ~ 874047 (+) False G2339912
TU2679063 lncRNA downstream 179 871107 ~ 873839 (+) False G2339912
TU2679072 lncRNA downstream 179 871107 ~ 873839 (+) True G2339912
XM_036972372.1 mRNA upstream 52753 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 52753 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 53473 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 53473 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972394.1 mRNA upstream 101807 762579 ~ 768787 (+) True LOC110495334
XR_005041788.1 mRNA downstream 74524 945452 ~ 946013 (+) False LOC118947137
XM_036972352.1 mRNA downstream 108665 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 108665 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 108666 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 331109 1202037 ~ 1208674 (+) False blzf1
TU2678903 other upstream 185046 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 406127 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 772738 97115 ~ 97856 (+) True G2339343
TU2679051 other downstream 179 871107 ~ 873839 (+) False G2339912
TU2679060 other downstream 179 871107 ~ 873839 (+) False G2339912
TU2679067 other downstream 179 871107 ~ 873839 (+) False G2339912
TU2679071 other downstream 179 871107 ~ 873839 (+) False G2339912
TU2679153 other downstream 101551 972479 ~ 972783 (+) True G2339955

Expression Profile