RNA id: TU2679070


Basic Information

Item Value
RNA id TU2679070
length 2488
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id G2339912
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 870947 ~ 900840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcctctcccttgtaactattccccaggtcgtttctgtaaatgagaacgtgttctcagtcaacttacctggtaaaataacggatgaATAAATGTAAAAATCTTCCTGCAACACATTCTGAATGAAAGCCACTCAGACAACAACCGGTTTGCAATAATGTTGCCTTCATTTAGTTATTTCCAGGACAAAACAAGCTCATTTTAAACCATTCAGTTGTTCTGTACAGAGATACATAATAACTTCTTCTTAATACTCTTGATATATTTATACAAAATACACTGTTATCCTTCAGCAGGGGCGTTTTAGAAGAGGGAATTCCTGGGAAGGTGGATTAGGGTTATCATTTTTAGGGGGGGACAATTTGAAGATGCTAGTCTGAAGATATAAAACACAAGGAGCATTAAAGTACAGACTATTCTGTAGGACAAGACGCTAGTCTGAAGATATAAAACACACTCAATGTTGAGGAccagcaaacatttaaaaaaaaaaaaaaaccacacAAAGATAGAAAATATACATTTGTAGCAATTGGCATCATGTTTTTTAAATAGATTGTGGTGTGGAGATATACAAAGATATCTCAGCAACACATATGACTTGGTTCAGAAATACAGATGTAGAAAATATAGTCTGGGTACCAGCCTGTTTAGCTAGCTTTCCATTAGGAAACAACGACATAGGAGTGGAATGTTATCTAACCAGACCGGTAGCCGGACTACAGAAGACTGTCTGCCATCATGGAAGACTCTGTACCTAACAACACCCACGGACTACAGAGAGAATGGATGCCCAGCTAGATCTGATGCGTTGGACATAGCAACCAGTCACAGGGTTAGTTCTGTTGGTTTGGACATAGCAACCAGTCACAGGGTTAGATCTGTTGGTTTGGACATAGCAACCAGTCACAGGGTTAGTTCTGTTGGTTTGGACATAGCAACCAGTCACAGGGTTAGTTCTGTTGGTTTGGACGTAGCAACCAGTCACAGGGTTAGATCTGTTGGTTTGGACATAGCAACCAGTCACAGGGGTTAGTTCTGTTGGTTTGGACATAGCAACCAGTCACCAGGTTAGATCTGTTGCTTTGGACATAGCAACCAGTCACAGGGTTAGTTCTGTTGGTTTGGACATAGCAACCAGTCACAGGGTTAGATCTGTTGCTTTGGACATAGCAACCAGTCACAGGGTTAGATCTGTTGGTTTAGACATAGCAACCAGTCACAGGGTTAGTTATGTTGCTTTGGACATAGCAACCAGTCAACGGGTTAGTTTAGTTGGTTTCCCACAATGCAGAGAGTGAACCATAATAGCCGTACCTTCCATAGGCCCTGGACCTGACCATTAACTAGATTCACAGCAGGAGAAATCTGAGGGAATGCATACACAACTGGGATTTGTAGTTCTGACCCAGGGACAGGGTACAGGCCAGGAGGCAGCAGAGTTCTGACCCAGACCAGGAGGCAGCAGAGTTCTTACCCAGGGACAGGGTACAGGCCAGGAGGCAGTAGAGTTCTGACCCAGGGACAGGGTACAGGCCAGGAGGCAGTAGAGTTCTGACCCAGGGACAGGGTACAGGCCAGGAGGCAGCAGAGTTCTGACCCAGACCAGGAGGCAGCAGAGTTCTGACCCAGGGACAGGGTACAGGCCAGGAGGCAGCAGAGTTCTTACCCAGGGACAGGGTACAGACCAGGAGGCAGTAGAGTTCTGACCCAGGGACAGGGTACAGGCCAGGAGGCAGTAGAGTTCTGACCCAGGGACAGGGTACAGGCCaggaggcagcagagaactacCAAAATGCAGAACCAGGCTCGGAATTAAAACACTACAACTCTTAAACAATTAAAACAGGACGATCCAGATTGTAAATGAAGGCTGCACTAATCAGTCAGATGAACAGCTAGGGTCCTCATGGTCGCTGTCGCTGACTGATGACCTGcccgtctcctccctctgtcatcaTCTTTCCCTGGAAGGAGtgcgggggggtggggggggggttaaacaCATACATAGTCGGGCGTGACCCCAAGTGAACAGTCTTTCAACCTAGAGTTTGGTCTGTGTGACTTGAAATACAAAGGAATCGGTTGTTTTCACACCAGGAATATACCACTTAAACCATTTGGTTATCAAACATTACAGAAACATGAACAACGAAATCAGATTGTTTCAGAAGGTGCTGAGGCAGTAGCTTTATGTCCGTTGTGGGGCGGGGTAAAGTGCGTGGTCACTGGTACACCAACAGTCCAGAGCTTTGTGTTGTAGCACATCATCATAGACTATTCTACCCCATTAGACCTCGGCTCTGAGTGTCCGTGTTCTGAAAGATGCACCATGGGAAGCCGTGGACCAGGAGGTAACCAGGAAGTGTTGCTAGGTCTCAGGTCATCGGGGACGGAGCTCTGCGCTTCATGGCAGTGGTTGGTGGGCGGGGCTAGATGGAGTAGGTGGAGCTCTCAGACTGTTGGTGGATGTAACACTGAAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679079 lncRNA upstream 19 870594 ~ 870928 (+) True G2339917
TU2679044 lncRNA upstream 3530 864778 ~ 867417 (+) False G2339909
TU2679045 lncRNA upstream 3803 865060 ~ 867144 (+) True G2339909
TU2679024 lncRNA upstream 13617 852853 ~ 857330 (+) True G2339892
TU2679025 lncRNA upstream 18426 848430 ~ 852521 (+) True G2339893
TU2679084 lncRNA downstream 5854 879693 ~ 880261 (+) False G2339920
TU2679085 lncRNA downstream 5854 879693 ~ 880261 (+) False G2339920
TU2679086 lncRNA downstream 5854 879693 ~ 880261 (+) True G2339920
TU2679092 lncRNA downstream 14749 888588 ~ 889226 (+) True G2339925
TU2679047 lncRNA downstream 17401 891240 ~ 893127 (+) True G2339911
XM_036972372.1 mRNA upstream 53106 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 53106 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 53826 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 53826 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972394.1 mRNA upstream 102160 762579 ~ 768787 (+) True LOC110495334
XR_005041788.1 mRNA downstream 71613 945452 ~ 946013 (+) False LOC118947137
XM_036972352.1 mRNA downstream 105754 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 105754 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 105755 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 328198 1202037 ~ 1208674 (+) False blzf1
TU2678903 other upstream 185399 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 406480 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 773091 97115 ~ 97856 (+) True G2339343
TU2679153 other downstream 98640 972479 ~ 972783 (+) True G2339955
TU2679430 other downstream 243104 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 243104 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 333419 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 406056 1279895 ~ 1301250 (+) True pibf1

Expression Profile