RNA id: TU2679053


Basic Information

Item Value
RNA id TU2679053
length 356
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G2339912
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 870947 ~ 900840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCTTCATTTAGTTATTTCCAGGACAAAACAAGCTCATTTTAAACCATTCAGTTGTTCTGTACAGAGATACATAATAACTTCTTCTTAATACTCTTGATATATTTATACAAAATACACTGTTATCCTTCAGCAGGGGCGTTTTAGAAGAGGGAATTCCTGGGAAGGTGGATTAGGGTTATCATTTTTAGGGGGGGACAATTTGAAGATGCTAGTCTGAAGATATAAAACACAAGGAGCATTAAAGTACAGACTATTCTGTAGGACAAGACGCTAGTCTGAAGATATAAAACACACTCAATGTTGAGGAccagACAAACTGTCTCTTGGTGTGACTAAGAGGTCGTGTCAcctgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679079 lncRNA upstream 179 870594 ~ 870928 (+) True G2339917
TU2679044 lncRNA upstream 3690 864778 ~ 867417 (+) False G2339909
TU2679045 lncRNA upstream 3963 865060 ~ 867144 (+) True G2339909
TU2679024 lncRNA upstream 13777 852853 ~ 857330 (+) True G2339892
TU2679025 lncRNA upstream 18586 848430 ~ 852521 (+) True G2339893
TU2679094 lncRNA downstream 1753 902593 ~ 904836 (+) True G2339926
TU2679111 lncRNA downstream 10963 911803 ~ 912256 (+) True G2339933
TU2679120 lncRNA downstream 30291 931131 ~ 931995 (+) True G2339940
TU2679136 lncRNA downstream 44453 945293 ~ 946912 (+) False LOC118947137
TU2679137 lncRNA downstream 44453 945293 ~ 946912 (+) False LOC118947137
XM_036972372.1 mRNA upstream 53266 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 53266 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 53986 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 53986 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972394.1 mRNA upstream 102320 762579 ~ 768787 (+) True LOC110495334
XR_005041788.1 mRNA downstream 44612 945452 ~ 946013 (+) False LOC118947137
XM_036972352.1 mRNA downstream 78753 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 78753 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 78754 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 301197 1202037 ~ 1208674 (+) False blzf1
TU2678903 other upstream 185559 683344 ~ 685548 (+) True G2339795
TU2678479 other upstream 406640 463198 ~ 464467 (+) True G2339478
TU2678285 other upstream 773251 97115 ~ 97856 (+) True G2339343
TU2679153 other downstream 71639 972479 ~ 972783 (+) True G2339955
TU2679430 other downstream 216103 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 216103 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 306418 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 379055 1279895 ~ 1301250 (+) True pibf1

Expression Profile