RNA id: TU2679086


Basic Information

Item Value
RNA id TU2679086
length 415
lncRNA type intronic
GC content 0.40
exon number 3
gene id G2339920
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 879693 ~ 880261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATAGATCTACAGTCAATACTATCTAGAGTCTGGACTCTGGATCACTAAGTTGTTTAGACTCATAACAGTCAATACTATCTAGAGTCTGGATCACTAAGTTGTTTAGACTCATAACAGTCAATACTATCTAGAGTCTGGACCGCTAAGTTGTTTAGACTCATAACAGTCAATACTATCTAGAGTCTGGACTCTGGATCACTAAGTTGTTTAGACTCATAACAGTCAATACTATCTAGAGTCTGGACTCTGGACCGCTAAGCTGTTTAGGATCATAACGTCAATTAATACCCTGGTAGTTGGTGTTTGGCAGTTGGTGTTTGGTAGTTAGTGTTTGGTAGTTAGTGTTTGGTAGTTGGTGTTTGGCAGTTGGTGTTTGGCAGTTGGTGTTTGGTAGTTGGTGTTTGGTAGTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679058 lncRNA upstream 5646 871107 ~ 874047 (+) False G2339912
TU2679070 lncRNA upstream 5854 870947 ~ 873839 (+) False G2339912
TU2679063 lncRNA upstream 5854 871107 ~ 873839 (+) False G2339912
TU2679072 lncRNA upstream 5854 871107 ~ 873839 (+) True G2339912
TU2679079 lncRNA upstream 8765 870594 ~ 870928 (+) True G2339917
TU2679092 lncRNA downstream 8327 888588 ~ 889226 (+) True G2339925
TU2679047 lncRNA downstream 10979 891240 ~ 893127 (+) True G2339911
TU2679074 lncRNA downstream 18074 898335 ~ 899182 (+) True G2339913
TU2679094 lncRNA downstream 22332 902593 ~ 904836 (+) True G2339926
TU2679111 lncRNA downstream 31542 911803 ~ 912256 (+) True G2339933
XM_036972372.1 mRNA upstream 61852 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 61852 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 62572 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 62572 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972394.1 mRNA upstream 110906 762579 ~ 768787 (+) True LOC110495334
XR_005041788.1 mRNA downstream 65191 945452 ~ 946013 (+) False LOC118947137
XM_036972352.1 mRNA downstream 99332 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 99332 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 99333 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 321776 1202037 ~ 1208674 (+) False blzf1
TU2679051 other upstream 5854 871107 ~ 873839 (+) False G2339912
TU2679060 other upstream 5854 871107 ~ 873839 (+) False G2339912
TU2679067 other upstream 5854 871107 ~ 873839 (+) False G2339912
TU2679071 other upstream 5854 871107 ~ 873839 (+) False G2339912
TU2678903 other upstream 194145 683344 ~ 685548 (+) True G2339795
TU2679153 other downstream 92218 972479 ~ 972783 (+) True G2339955
TU2679430 other downstream 236682 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 236682 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 326997 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 399634 1279895 ~ 1301250 (+) True pibf1

Expression Profile