RNA id: TU2679092


Basic Information

Item Value
RNA id TU2679092
length 342
lncRNA type intronic
GC content 0.54
exon number 2
gene id G2339925
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 888588 ~ 889226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCCCAGACATCCAGGACGTACAGCCAGTGTCTGAAAAATCGCCAAAGCTTCCAGCCACCCGAGACAAGGACTGTTCTCCCTGCTCCTGTCCTGCAggcggtaccggtgcatcaaggtTCAGACAAACAGACTCCTAAACcgcttctatcccctggccataagacaaTGACTGTTCTCCACGCTCCTGTCCTGCAggcggtaccggtgcatcaaggtTCAGACAAACAGACTCCTAAACCGCTTCTATCCCCTGACCATAAGACAAGGACTGTTCTCCCTGCTCCTGTCCTGCAggcggtaccggtgcatcaaggtTCAGACAAACAGACTCCTAAACcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679084 lncRNA upstream 8327 879693 ~ 880261 (+) False G2339920
TU2679085 lncRNA upstream 8327 879693 ~ 880261 (+) False G2339920
TU2679086 lncRNA upstream 8327 879693 ~ 880261 (+) True G2339920
TU2679058 lncRNA upstream 14541 871107 ~ 874047 (+) False G2339912
TU2679070 lncRNA upstream 14749 870947 ~ 873839 (+) False G2339912
TU2679047 lncRNA downstream 2014 891240 ~ 893127 (+) True G2339911
TU2679074 lncRNA downstream 9109 898335 ~ 899182 (+) True G2339913
TU2679094 lncRNA downstream 13367 902593 ~ 904836 (+) True G2339926
TU2679111 lncRNA downstream 22577 911803 ~ 912256 (+) True G2339933
TU2679120 lncRNA downstream 41905 931131 ~ 931995 (+) True G2339940
XM_036972372.1 mRNA upstream 70747 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 70747 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 71467 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 71467 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972394.1 mRNA upstream 119801 762579 ~ 768787 (+) True LOC110495334
XR_005041788.1 mRNA downstream 56226 945452 ~ 946013 (+) False LOC118947137
XM_036972352.1 mRNA downstream 90367 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 90367 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 90368 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 312811 1202037 ~ 1208674 (+) False blzf1
TU2679051 other upstream 14749 871107 ~ 873839 (+) False G2339912
TU2679060 other upstream 14749 871107 ~ 873839 (+) False G2339912
TU2679067 other upstream 14749 871107 ~ 873839 (+) False G2339912
TU2679071 other upstream 14749 871107 ~ 873839 (+) False G2339912
TU2678903 other upstream 203040 683344 ~ 685548 (+) True G2339795
TU2679153 other downstream 83253 972479 ~ 972783 (+) True G2339955
TU2679430 other downstream 227717 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 227717 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 318032 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 390669 1279895 ~ 1301250 (+) True pibf1

Expression Profile