RNA id: TU2679094


Basic Information

Item Value
RNA id TU2679094
length 1529
lncRNA type antisense_over
GC content 0.52
exon number 3
gene id G2339926
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 902593 ~ 904836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGATAGCACCAACCTCCCCTCACCTCACCTTAAAGTAGACAGATAGCACCAACCTCCCCTCACCTCACCTTAAAGTAGACAGATAGCACCAACctcccctcacctcacctcaaAGTAGACAGATAGCAccaacctcccctcctctcacctcaaAGTAGACAGATAGCACCAACCTCCCCTCACCTCACCTTAAAGTAGACAGATAGCACCAACCTCCCCTCACCTCAAAGTAGACAGATAGCACcaacctctcctcacctcaccttaAAGTAGACAGATAGCACCAACCTCCCCTCACCTCACCTTAAAGTAGACAGATAGCAccaacctcccctcctctcacctcaaAGTAGACAGATAGCAccaacctcccctcccctcacctcaaaGTAGACAGATAGCACCAACCTCCCCTCACCTCAAAGTAGACAGACAGCACCAACCTCCCCTCACCTCAAAGTAGACAGATAGCACCAACCTCCCCTCACCTCAAAGTAGACAGACAGCAccaacctctcctcctctcaccccaaAGTAGACAGATAGCAccaacctcccctcctctcaccccaaATTAGACAGATAGCAccaacctcccctcccctcacctcaaaGTAGACAGATAGCACCAACCTCCCCTCACCTCAAAGTAGACAGACAGCAccaacctctcctcccctcaaagtagacagacagcaccaacctctcctcccctcaaagtagacagacagcaccaacctctcctcccctcaaagtagacagacagcaccaacctctcctcccctcaaagTAGACAGATAGCAccaacctctcctcccctcaaagtagacagacagcaccaacctctcctcccctcaaagTAGACAGAGCAcaaacctctcctcccctcaaagTAGACAGACAGCACCAACCTCCCCTCACCTCACAGTAGACAGATATCAccaacctcccctcccctcacctcaaaGTAGACAGATAGCACCAACCTCCCCTCACCTCAAAGTAGACAAATAACAccaacctccctcacctcacctcaaAGTAGACAGATAGCACCAACCTCCCCTCACCTCAAAGTAGACAGATAGCAccaacctctcctcccctcaaagTAGACAGACAGCACCAACCTCCCCTCACCTCAAAGTAGACAGATAGCACCAACCTCCCCTCACCTCAAAGTAGACAGATAGCACCAACCTCTCCTCACCTCAAAGTAGACAGATAGCACCAACCTCCCCTCACCTCAAAGTAGACAGATAGCACCAACCTCCCCTCACCTCAAAGTAGACAGACAGCACCAACCTCCCCTCACctcacagtagacagacagcaccaACCACCCCTCACCTCACAGTAGACAGATAGCACCAACCTCCCCTCACCTCAAAGTAGAAAGTCTCATCAAACTGGGGGTTGTTGGTTTTCCTTTTCACCTTGGTCTTTTTAGCTTCTGATctgtacagagagaggggggagggagagagagagcgggagagagaggggggagggagagagagagcgggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679053 lncRNA upstream 1753 871107 ~ 900840 (+) False G2339912
TU2679074 lncRNA upstream 3411 898335 ~ 899182 (+) True G2339913
TU2679047 lncRNA upstream 9466 891240 ~ 893127 (+) True G2339911
TU2679092 lncRNA upstream 13367 888588 ~ 889226 (+) True G2339925
TU2679084 lncRNA upstream 22332 879693 ~ 880261 (+) False G2339920
TU2679111 lncRNA downstream 6967 911803 ~ 912256 (+) True G2339933
TU2679120 lncRNA downstream 26295 931131 ~ 931995 (+) True G2339940
TU2679136 lncRNA downstream 40457 945293 ~ 946912 (+) False LOC118947137
TU2679137 lncRNA downstream 40457 945293 ~ 946912 (+) False LOC118947137
TU2679138 lncRNA downstream 40457 945293 ~ 946912 (+) False LOC118947137
XM_036972372.1 mRNA upstream 84752 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 84752 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 85472 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 85472 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972394.1 mRNA upstream 133806 762579 ~ 768787 (+) True LOC110495334
XR_005041788.1 mRNA downstream 40616 945452 ~ 946013 (+) False LOC118947137
XM_036972352.1 mRNA downstream 74757 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 74757 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 74758 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 297201 1202037 ~ 1208674 (+) False blzf1
TU2679051 other upstream 28754 871107 ~ 873839 (+) False G2339912
TU2679060 other upstream 28754 871107 ~ 873839 (+) False G2339912
TU2679067 other upstream 28754 871107 ~ 873839 (+) False G2339912
TU2679071 other upstream 28754 871107 ~ 873839 (+) False G2339912
TU2678903 other upstream 217045 683344 ~ 685548 (+) True G2339795
TU2679153 other downstream 67643 972479 ~ 972783 (+) True G2339955
TU2679430 other downstream 212107 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 212107 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 302422 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 375059 1279895 ~ 1301250 (+) True pibf1

Expression Profile