RNA id: TU2679159


Basic Information

Item Value
RNA id TU2679159
length 287
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G2339958
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 954560 ~ 954846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTGAGGGAGTGACTGAAGTAGTGTAGGAAGGGGACAGTTAGTGGTCCTGGAGGGCTGAGGGAGTGACTGAAGTAGTATAGGAAGGGGACAGTTAGTGGTCCTGGAGGGCTGAGGGAGTGACTGTAGTAGTATAGGAAGGGGACAGTTAGTGGTCCTGGAGGGCTGAGGGAGTGACTGAAGTAGTATAGTTAGGGGACAGTTAGTGGTCCTGGAGGGCTGAGGGAGTGACTGAAGTAGTGTAGGAAGGGGACAGTTAGTGGTACTGGAGGGCTGAGGGAGTGACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679136 lncRNA upstream 7648 945293 ~ 946912 (+) False LOC118947137
TU2679137 lncRNA upstream 7648 945293 ~ 946912 (+) False LOC118947137
TU2679138 lncRNA upstream 7648 945293 ~ 946912 (+) False LOC118947137
TU2679139 lncRNA upstream 7648 945293 ~ 946912 (+) True LOC118947137
TU2679120 lncRNA upstream 22565 931131 ~ 931995 (+) True G2339940
TU2679161 lncRNA downstream 16356 971202 ~ 971435 (+) True G2339960
TU2679164 lncRNA downstream 23393 978239 ~ 978444 (+) True G2339962
TU2679170 lncRNA downstream 35630 990476 ~ 991728 (+) True G2339966
TU2679172 lncRNA downstream 51784 1006630 ~ 1008051 (+) True G2339968
TU2679178 lncRNA downstream 62703 1017549 ~ 1019705 (+) True G2339972
XR_005041788.1 mRNA upstream 8547 945452 ~ 946013 (+) False LOC118947137
XM_036972372.1 mRNA upstream 136719 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 136719 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 137439 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972371.1 mRNA upstream 137439 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972352.1 mRNA downstream 24747 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 24747 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 24748 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 247191 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 247221 1202067 ~ 1208674 (+) False blzf1
TU2679051 other upstream 80721 871107 ~ 873839 (+) False G2339912
TU2679060 other upstream 80721 871107 ~ 873839 (+) False G2339912
TU2679067 other upstream 80721 871107 ~ 873839 (+) False G2339912
TU2679071 other upstream 80721 871107 ~ 873839 (+) False G2339912
TU2678903 other upstream 269012 683344 ~ 685548 (+) True G2339795
TU2679153 other downstream 17633 972479 ~ 972783 (+) True G2339955
TU2679430 other downstream 162097 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 162097 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 252412 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 325049 1279895 ~ 1301250 (+) True pibf1

Expression Profile