RNA id: TU2679161


Basic Information

Item Value
RNA id TU2679161
length 234
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2339960
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 971202 ~ 971435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagtaacacaaacgagaatccgacaaagacaggagcaggaacagagagagatatagagacctaatcagagggaaaaagggaacaggtgggaaaaggggtgaacgaggtagttagagaagacaaggcacagctgggggaaagaggggaagaaaaggtaacctaatacgaccagcagagggagacagggtgaagagaaagaacaggaacaggacacaacatgacaatacatgaca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679159 lncRNA upstream 16356 954560 ~ 954846 (+) True G2339958
TU2679136 lncRNA upstream 24290 945293 ~ 946912 (+) False LOC118947137
TU2679137 lncRNA upstream 24290 945293 ~ 946912 (+) False LOC118947137
TU2679138 lncRNA upstream 24290 945293 ~ 946912 (+) False LOC118947137
TU2679139 lncRNA upstream 24290 945293 ~ 946912 (+) True LOC118947137
TU2679164 lncRNA downstream 6804 978239 ~ 978444 (+) True G2339962
TU2679170 lncRNA downstream 19041 990476 ~ 991728 (+) True G2339966
TU2679172 lncRNA downstream 35195 1006630 ~ 1008051 (+) True G2339968
TU2679178 lncRNA downstream 46114 1017549 ~ 1019705 (+) True G2339972
TU2679180 lncRNA downstream 60777 1032212 ~ 1034525 (+) True G2339974
XR_005041788.1 mRNA upstream 25189 945452 ~ 946013 (+) False LOC118947137
XM_036972372.1 mRNA upstream 153361 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 153361 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 154081 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972352.1 mRNA downstream 8158 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA downstream 8158 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA downstream 8159 979594 ~ 1046298 (+) True tpp2
XM_036972382.1 mRNA downstream 230602 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 230632 1202067 ~ 1208674 (+) False blzf1
TU2679051 other upstream 97363 871107 ~ 873839 (+) False G2339912
TU2679060 other upstream 97363 871107 ~ 873839 (+) False G2339912
TU2679067 other upstream 97363 871107 ~ 873839 (+) False G2339912
TU2679071 other upstream 97363 871107 ~ 873839 (+) False G2339912
TU2678903 other upstream 285654 683344 ~ 685548 (+) True G2339795
TU2679153 other downstream 1044 972479 ~ 972783 (+) True G2339955
TU2679430 other downstream 145508 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 145508 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 235823 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 308460 1279895 ~ 1301250 (+) True pibf1

Expression Profile