RNA id: TU2679172


Basic Information

Item Value
RNA id TU2679172
length 253
lncRNA type intronic
GC content 0.51
exon number 2
gene id G2339968
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1006630 ~ 1008051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagagagagggactggtttatactgaggtatgaagaggagagagagggactgcattatactgaggtacggagaggagagagagggactgcattatactgaggtacggagaggagagagagggactgcattatactgaggtacggagaggagagagagggactgcaGTATATTGAggtacggagaggagagagagggactggtttatactgaggtacggagaggagagagaggaggatgtccaGTATTGAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679170 lncRNA upstream 14902 990476 ~ 991728 (+) True G2339966
TU2679164 lncRNA upstream 28186 978239 ~ 978444 (+) True G2339962
TU2679161 lncRNA upstream 35195 971202 ~ 971435 (+) True G2339960
TU2679159 lncRNA upstream 51784 954560 ~ 954846 (+) True G2339958
TU2679138 lncRNA upstream 59718 945293 ~ 946912 (+) False LOC118947137
TU2679178 lncRNA downstream 9498 1017549 ~ 1019705 (+) True G2339972
TU2679180 lncRNA downstream 24161 1032212 ~ 1034525 (+) True G2339974
TU2679184 lncRNA downstream 30487 1038538 ~ 1039068 (+) True G2339977
TU2679400 lncRNA downstream 53314 1061365 ~ 1061690 (+) True G2340101
TU2679406 lncRNA downstream 59877 1067928 ~ 1092799 (+) False G2340105
XR_005041788.1 mRNA upstream 60617 945452 ~ 946013 (+) False LOC118947137
XM_036972372.1 mRNA upstream 188789 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 188789 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 189509 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972382.1 mRNA downstream 193986 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 194016 1202067 ~ 1208674 (+) False blzf1
XM_036972381.1 mRNA downstream 194016 1202067 ~ 1208674 (+) False blzf1
XM_036972383.1 mRNA downstream 194016 1202067 ~ 1208674 (+) False blzf1
XM_036972385.1 mRNA downstream 194109 1202160 ~ 1208674 (+) False blzf1
TU2679153 other upstream 33847 972479 ~ 972783 (+) True G2339955
TU2679051 other upstream 132791 871107 ~ 873839 (+) False G2339912
TU2679430 other downstream 108892 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 108892 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 199207 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 271844 1279895 ~ 1301250 (+) True pibf1

Expression Profile