RNA id: TU2679180


Basic Information

Item Value
RNA id TU2679180
length 824
lncRNA type intronic
GC content 0.41
exon number 2
gene id G2339974
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1032212 ~ 1034525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgtaaacgatgagagagaagcagtatgacttgtcactagttgtaaacgatgaaagagaagcagtatgacttgccactagttgtaaacgatgagagagaagcagtatgacttgccactagttgtaaacgatgaaagagaagcagtatgacttgccactagttgtaaacgatgagagagaagcagtatgacttgccactagttgtaaacgatgaaagagaagcagtatgacttgtcactagttgtaaacgatgagagagaagcagtatgacttgccacgagttgagagagagagagaagcagtatgacttgtcactagttgtaaacgatgagagagagagagagaagcagtatgacttgccactagttgtaaacgatgagagagaagcagtatgacttgccactagttgtaaacgatgagagagagagagaagcagtatgacttgccactagttgtaaacgatgagagagaagcagtatgactttccactagttgtaaacgatgagagagaagcagtatgacttgtcactagttgagagagagagagaagcagtatgacttgccactagttgtaaacgatgagagagaagcagtatgacttgtcactagttgtaaacgatgagagagaagcagtatgacttgccactagttgtaaacgatgaaagagagaagcagtatgacttgccactagttgtaaacgatgagagagaagcagtatgacttgtcactagttgtaaacgatgagagagaagcagtatgacttgtcactagttgtaaacgatgagagagaagcagtatgacttgtcactagttgtaaacgatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679178 lncRNA upstream 12507 1017549 ~ 1019705 (+) True G2339972
TU2679172 lncRNA upstream 24161 1006630 ~ 1008051 (+) True G2339968
TU2679170 lncRNA upstream 40484 990476 ~ 991728 (+) True G2339966
TU2679164 lncRNA upstream 53768 978239 ~ 978444 (+) True G2339962
TU2679161 lncRNA upstream 60777 971202 ~ 971435 (+) True G2339960
TU2679184 lncRNA downstream 4013 1038538 ~ 1039068 (+) True G2339977
TU2679400 lncRNA downstream 26840 1061365 ~ 1061690 (+) True G2340101
TU2679406 lncRNA downstream 33403 1067928 ~ 1092799 (+) False G2340105
TU2679407 lncRNA downstream 33403 1067928 ~ 1092799 (+) False G2340105
TU2679411 lncRNA downstream 57519 1092044 ~ 1092799 (+) True G2340105
XR_005041788.1 mRNA upstream 86199 945452 ~ 946013 (+) False LOC118947137
XM_036972372.1 mRNA upstream 214371 811487 ~ 817841 (+) False si:ch73-41e3.7
XR_005041785.1 mRNA upstream 214371 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972370.1 mRNA upstream 215091 811487 ~ 817121 (+) False si:ch73-41e3.7
XM_036972382.1 mRNA downstream 167512 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 167542 1202067 ~ 1208674 (+) False blzf1
XM_036972381.1 mRNA downstream 167542 1202067 ~ 1208674 (+) False blzf1
XM_036972383.1 mRNA downstream 167542 1202067 ~ 1208674 (+) False blzf1
XM_036972385.1 mRNA downstream 167635 1202160 ~ 1208674 (+) False blzf1
TU2679153 other upstream 59429 972479 ~ 972783 (+) True G2339955
TU2679051 other upstream 158373 871107 ~ 873839 (+) False G2339912
TU2679430 other downstream 82418 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 82418 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 172733 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 245370 1279895 ~ 1301250 (+) True pibf1

Expression Profile