RNA id: TU2679400


Basic Information

Item Value
RNA id TU2679400
length 326
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2340101
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1061365 ~ 1061690 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttaacaaatcaaaaactgaacaattgggcgtgcaaaattattcagcccccttaacttaatactttgtagcgccaccttttgctgcgattacatctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaatttttttcccattcctccttgcaaaacagctcgagctcagtgaggtttgatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679184 lncRNA upstream 22297 1038538 ~ 1039068 (+) True G2339977
TU2679180 lncRNA upstream 26840 1032212 ~ 1034525 (+) True G2339974
TU2679178 lncRNA upstream 41660 1017549 ~ 1019705 (+) True G2339972
TU2679172 lncRNA upstream 53314 1006630 ~ 1008051 (+) True G2339968
TU2679170 lncRNA upstream 69637 990476 ~ 991728 (+) True G2339966
TU2679406 lncRNA downstream 6238 1067928 ~ 1092799 (+) False G2340105
TU2679407 lncRNA downstream 6238 1067928 ~ 1092799 (+) False G2340105
TU2679411 lncRNA downstream 30354 1092044 ~ 1092799 (+) True G2340105
TU2679423 lncRNA downstream 38347 1100037 ~ 1100972 (+) True G2340113
TU2679439 lncRNA downstream 55253 1116943 ~ 1118969 (+) False G2340118
XM_036972352.1 mRNA upstream 15067 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA upstream 15067 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA upstream 15067 979594 ~ 1046298 (+) True tpp2
XR_005041788.1 mRNA upstream 115352 945452 ~ 946013 (+) False LOC118947137
XM_036972372.1 mRNA upstream 243524 811487 ~ 817841 (+) False si:ch73-41e3.7
XM_036972382.1 mRNA downstream 140347 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 140377 1202067 ~ 1208674 (+) False blzf1
XM_036972381.1 mRNA downstream 140377 1202067 ~ 1208674 (+) False blzf1
XM_036972383.1 mRNA downstream 140377 1202067 ~ 1208674 (+) False blzf1
XM_036972385.1 mRNA downstream 140470 1202160 ~ 1208674 (+) False blzf1
TU2679153 other upstream 88582 972479 ~ 972783 (+) True G2339955
TU2679051 other upstream 187526 871107 ~ 873839 (+) False G2339912
TU2679430 other downstream 55253 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 55253 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 145568 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 218205 1279895 ~ 1301250 (+) True pibf1

Expression Profile