RNA id: TU2679406


Basic Information

Item Value
RNA id TU2679406
length 638
lncRNA type read_through
GC content 0.43
exon number 2
gene id G2340105
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1067928 ~ 1092799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaccatacaAACTGAAACAAGACAGCGAAGTGCATACATTTTAATATTAATATCAACTATCTAAGTACGTGTGTAAAAACAAAGTAAACAATAAAGCACTATATATAGTAGATCATTTGAAAGTAGAAatcaaacatcaacaacaacatcagtAGTCCATCAACGTCCATTATCATTAGCCAAGATGGCCGCCTTCTGTCTTCAAGCATTTCTCAGAGGAAGAAGAAAAGACTCTTGGTTACAGTCGGCAGGATGTCGACAGTAGTTCCTCAGCCTTCTTTCCACAATTCCTACCTTTTACATGTGGCCTTGAAGATCTTAacctctcccatctcagccagcaGGGTGGTGTTGAAGGtgatcctctgtctctctgcatgtGGCCTTGAAGATCTTAacctctcccatctcagccagcaGGGTGGTGTTGAAGGtggtcctctgtctctctacatgtgGCCTTGAAGATCTTAacctctcccatctcagccaGGAGGGTGGTGTTGAAGGTGTTCTTGAAGTCCTCAGTGAATACCAGGTCTGTGGGAAAGCGGACCTTGTTGGCCCAGATCAGAGTGGTTCCTAAGGGAAATAAAATGAGTTGTTTAAGGCTTTCATGTCTTACTTTCTGGGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679400 lncRNA upstream 6238 1061365 ~ 1061690 (+) True G2340101
TU2679184 lncRNA upstream 28860 1038538 ~ 1039068 (+) True G2339977
TU2679180 lncRNA upstream 33403 1032212 ~ 1034525 (+) True G2339974
TU2679178 lncRNA upstream 48223 1017549 ~ 1019705 (+) True G2339972
TU2679172 lncRNA upstream 59877 1006630 ~ 1008051 (+) True G2339968
TU2679423 lncRNA downstream 7238 1100037 ~ 1100972 (+) True G2340113
TU2679439 lncRNA downstream 24144 1116943 ~ 1118969 (+) False G2340118
TU2679450 lncRNA downstream 24144 1116943 ~ 1118969 (+) False G2340118
TU2679451 lncRNA downstream 24144 1116943 ~ 1118969 (+) True G2340118
TU2679453 lncRNA downstream 26677 1119476 ~ 1124849 (+) True G2340119
XM_036972352.1 mRNA upstream 21630 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA upstream 21630 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA upstream 21630 979594 ~ 1046298 (+) True tpp2
XR_005041788.1 mRNA upstream 121915 945452 ~ 946013 (+) False LOC118947137
XM_036972371.1 mRNA upstream 250807 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972382.1 mRNA downstream 109238 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 109268 1202067 ~ 1208674 (+) False blzf1
XM_036972381.1 mRNA downstream 109268 1202067 ~ 1208674 (+) False blzf1
XM_036972383.1 mRNA downstream 109268 1202067 ~ 1208674 (+) False blzf1
XM_036972385.1 mRNA downstream 109361 1202160 ~ 1208674 (+) False blzf1
TU2679153 other upstream 95145 972479 ~ 972783 (+) True G2339955
TU2679051 other upstream 194089 871107 ~ 873839 (+) False G2339912
TU2679430 other downstream 24144 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 24144 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 114459 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 187096 1279895 ~ 1301250 (+) True pibf1

Expression Profile