RNA id: TU2679423


Basic Information

Item Value
RNA id TU2679423
length 211
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G2340113
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1100037 ~ 1100972 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcaatacactcctcatattctcatctcagtcaacacactcctcatattctcatctcagtcaacacactcctcatattctcatctcagtcaacacactctTCATATTCTTTCCTGCATTGAAAAATACAGCGTGAGCGGCTATTCTGACTCTATTCTGGTTCTATTCTGGCTCTATTCTGGCTCTATTCTGGTTCTATTCTGGCTCTATTC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679406 lncRNA upstream 7238 1067928 ~ 1092799 (+) False G2340105
TU2679407 lncRNA upstream 7238 1067928 ~ 1092799 (+) False G2340105
TU2679411 lncRNA upstream 7238 1092044 ~ 1092799 (+) True G2340105
TU2679400 lncRNA upstream 38347 1061365 ~ 1061690 (+) True G2340101
TU2679184 lncRNA upstream 60969 1038538 ~ 1039068 (+) True G2339977
TU2679439 lncRNA downstream 15971 1116943 ~ 1118969 (+) False G2340118
TU2679450 lncRNA downstream 15971 1116943 ~ 1118969 (+) False G2340118
TU2679451 lncRNA downstream 15971 1116943 ~ 1118969 (+) True G2340118
TU2679453 lncRNA downstream 18504 1119476 ~ 1124849 (+) True G2340119
TU2679457 lncRNA downstream 20827 1121799 ~ 1123838 (+) False G2340121
XM_036972352.1 mRNA upstream 53739 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA upstream 53739 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA upstream 53739 979594 ~ 1046298 (+) True tpp2
XR_005041788.1 mRNA upstream 154024 945452 ~ 946013 (+) False LOC118947137
XM_036972371.1 mRNA upstream 282916 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972382.1 mRNA downstream 101065 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 101095 1202067 ~ 1208674 (+) False blzf1
XM_036972381.1 mRNA downstream 101095 1202067 ~ 1208674 (+) False blzf1
XM_036972383.1 mRNA downstream 101095 1202067 ~ 1208674 (+) False blzf1
XM_036972385.1 mRNA downstream 101188 1202160 ~ 1208674 (+) False blzf1
TU2679153 other upstream 127254 972479 ~ 972783 (+) True G2339955
TU2679051 other upstream 226198 871107 ~ 873839 (+) False G2339912
TU2679430 other downstream 15971 1116943 ~ 1118969 (+) False G2340118
TU2679448 other downstream 15971 1116943 ~ 1118969 (+) False G2340118
TU2679512 other downstream 106286 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 178923 1279895 ~ 1301250 (+) True pibf1

Expression Profile