RNA id: TU2679448


Basic Information

Item Value
RNA id TU2679448
length 1117
RNA type TUCP
GC content 0.41
exon number 5
gene id G2340118
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1116943 ~ 1118969 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGTtgtttataatgtactgtatttacaGACCAGAGGTGTTTATAATGTAcattatttctcagaacaatttaCAGACCAGAGGtgtttataatgtactgtatttacaGACCAGAGGCgtttataatgtactgtatttacaGACCAGAGGtgtttataatgtactgtatttacaGACCAGAGGtgtttataatgtactgtatttacaGACCAGAGGtgtttataatgtactgtatttacaGACCAGAGGtgtttataattattattatagcaACACAACAGGTGAAGCAGGTCTTGTTATGTACAGCAACACATCAGGTGAAGCAGGTTCTTGTTATGTACAGCAACACAACAGGTGAAGCAGGTCTTGTTATGTACAGCAACACATCAGGTGAAGCAGGTTCTTGTTATGTACAGCAACACATCAGGTGAAGCAGGTCTCGATATGTACAGCAACACATCAGGTGAAGCAGGTTCTTGTTATGTACAGCAACACAACAGGTGAAGCAGGTTCTTGTTATGTACAGCAACACATCAGGTGAAGCAGGTCTCGATATGTACAGCAACACATCAGGTGAAGCAGACACTATACATCTTCAATCAGAGATACAACTGAATAACAGAGAAAACAATAATATACTGATCTGCCCAGACGTGAAGAGAAGGAGAGTTCAAGACCCAGACATGAAGAGAAGGAGAGTTCAAGGCCCAGACATGAAGAGAAGGAGAGTTCAAGGCCCAGACATGAAGAGAAGGAGAGTTCAAGACCCAGACATGAAGAGAAGGAGAGTTCAAGGCCCAGACATGAAGAGAAGGAGAGTTCAAGGCCCAGACATGAAGGGAAGGAGAGTTCAAGACccagacatggagggaaggagagttcAAGACCCAGACATGAAGAGAGGAGAGTTCAAGACCCAGACATGAAGAGAGGAGAGTTCAAGgaccagatacagtgccttgcaaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttgcaacataaagatataaaactgtattttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679423 lncRNA upstream 15971 1100037 ~ 1100972 (+) True G2340113
TU2679406 lncRNA upstream 24144 1067928 ~ 1092799 (+) False G2340105
TU2679407 lncRNA upstream 24144 1067928 ~ 1092799 (+) False G2340105
TU2679411 lncRNA upstream 24144 1092044 ~ 1092799 (+) True G2340105
TU2679400 lncRNA upstream 55253 1061365 ~ 1061690 (+) True G2340101
TU2679453 lncRNA downstream 507 1119476 ~ 1124849 (+) True G2340119
TU2679457 lncRNA downstream 2830 1121799 ~ 1123838 (+) False G2340121
TU2679458 lncRNA downstream 3871 1122840 ~ 1123838 (+) True G2340121
TU2679461 lncRNA downstream 7326 1126295 ~ 1128695 (+) True G2340123
TU2679463 lncRNA downstream 12811 1131780 ~ 1132281 (+) True G2340125
XM_036972352.1 mRNA upstream 70645 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA upstream 70645 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA upstream 70645 979594 ~ 1046298 (+) True tpp2
XR_005041788.1 mRNA upstream 170930 945452 ~ 946013 (+) False LOC118947137
XM_036972371.1 mRNA upstream 299822 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972382.1 mRNA downstream 83068 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 83098 1202067 ~ 1208674 (+) False blzf1
XM_036972381.1 mRNA downstream 83098 1202067 ~ 1208674 (+) False blzf1
XM_036972383.1 mRNA downstream 83098 1202067 ~ 1208674 (+) False blzf1
XM_036972385.1 mRNA downstream 83191 1202160 ~ 1208674 (+) False blzf1
TU2679153 other upstream 144160 972479 ~ 972783 (+) True G2339955
TU2679051 other upstream 243104 871107 ~ 873839 (+) False G2339912
TU2679512 other downstream 88289 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 160926 1279895 ~ 1301250 (+) True pibf1

Expression Profile